SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_019895512.1 NCBI__GCF_000384235.1:WP_019895512.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

6j2lA Crystal structure of bi-functional enzyme (see paper)
43% identity, 65% coverage: 6:79/114 of query aligns to 113:178/200 of 6j2lA

query
sites
6j2lA
I
 
F
L
 
L
T
 
Y
Q
 
Q
L
 
L
D
 
E
Q
 
Q
V
 
L
L
 
L
Q
 
A
S
 
E
R
 
R
K
 
K
N
 
Y
D
 
A
S
 
D
P
 
P
D
 
E
D
 
T
S
 
S
Y
 
Y
V
 
T
A
 
A
S
 
K
L
 
L
Y
 
Y
H
 
A
K
 
S
G
 
G
L
 
T
D
 
K
K
 
R
I
 
I
L
 
A
K
 
Q
K
 
K
V
 
V
G
 
G
E
 
E
E
|
E
A
 
G
T
 
V
E
 
E
T
 
T
V
 
A
M
 
L
A
 
A
A
 
A
K
 
-
D
 
-
L
 
-
E
 
-
H
 
-
S
 
-
V
 
-
T
 
T
Q
 
V
H
 
H
Q
 
-
D
 
D
Q
 
R
T
 
F
H
 
E
L
 
L
I
 
T
G
 
N
E
|
E
V
 
A
A
 
S
D
|
D
L
 
L
W
 
M
F
 
Y
H
 
H

Sites not aligning to the query:

Query Sequence

>WP_019895512.1 NCBI__GCF_000384235.1:WP_019895512.1
MTDNDILTQLDQVLQSRKNDSPDDSYVASLYHKGLDKILKKVGEEATETVMAAKDLEHSV
TQHQDQTHLIGEVADLWFHTLVLLHHQGLSAQDVSRELERRFGLSGHEEKARRQ

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory