SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_020174371.1 NCBI__GCF_000385335.1:WP_020174371.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

P07117 Sodium/proline symporter; Proline carrier; Proline permease; Propionate transporter from Escherichia coli (strain K12) (see 4 papers)
22% identity, 73% coverage: 5:365/494 of query aligns to 3:368/502 of P07117

query
sites
P07117
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Q

Sites not aligning to the query:

Query Sequence

>WP_020174371.1 NCBI__GCF_000385335.1:WP_020174371.1
MTSELDYPAIAVFVFFFLLVTVMGFVAAKWRRPATLAHIDEWGLGGRQFGTWITWFLVGG
DFYTAYTVIAVPALVFGVGAYGFFALPYTIIVYPFVFAVMPLLWRRAKDGAHVTAADIVH
DQYQSRGLELAVALTGIIATMPYIALQLIGMAAVIKALGLTGEIPLILAFLVLALYTYSS
GLRAPALIAFVKDAMIYIIVIVAIAIIPIKLGGYGAIFSAADEAFKAKGSGGILLAPSQY
MAYATLAFGSALAAFMYPHTLTGIFASKSAQTIRKNAMLLPAYTLLLGLIALLGYMGHAA
HLKVASNNDVVPMLFKTLFPGWFAGFAFAAIGIGALVPAAVMSIGAANLFTRNVWKAYVD
PNVSHAGEAKVAKVTSLVVKVGALLVILFLPTQFALDLQLLGGLWILQTFPAVVFGLFTN
WFRAPALLAGWASGLAVGTYFSWMDGLKPLHTLVFGDTKITLYVGLLALVLNIVVTLAVN
ALLAQRKPVISTAE

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory