SitesBLAST
Comparing WP_020563406.1 NCBI__GCF_000372865.1:WP_020563406.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
6ed7A Crystal structure of 7,8-diaminopelargonic acid synthase bound to inhibitor mac13772
61% identity, 97% coverage: 11:431/432 of query aligns to 4:423/429 of 6ed7A
- active site: Y17 (= Y24), Y144 (= Y152), D245 (= D253), K274 (= K282)
- binding 2-[(2-nitrophenyl)sulfanyl]acetohydrazide: Y17 (= Y24), W52 (= W59), W52 (= W59), Y144 (= Y152), D147 (= D155), A217 (= A225), K274 (= K282), R391 (= R399), F393 (= F401), F393 (= F401)
- binding pyridoxal-5'-phosphate: G112 (= G119), S113 (= S120), Y144 (= Y152), H145 (= H153), D245 (= D253), I247 (= I255), K274 (= K282)
P12995 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; 7,8-diamino-pelargonic acid aminotransferase; DAPA AT; DAPA aminotransferase; 7,8-diaminononanoate synthase; DANS; Diaminopelargonic acid synthase; EC 2.6.1.62 from Escherichia coli (strain K12) (see 4 papers)
61% identity, 97% coverage: 11:431/432 of query aligns to 4:423/429 of P12995
- Y17 (= Y24) mutation to F: Severely reduces the aminotransferase activity.
- W52 (= W59) binding substrate
- GS 112:113 (= GS 119:120) binding pyridoxal 5'-phosphate
- Y144 (= Y152) mutation to F: Severely reduces the aminotransferase activity.
- D147 (= D155) mutation to N: Loss of aminotransferase activity.
- D245 (= D253) binding pyridoxal 5'-phosphate
- R253 (= R261) mutation to A: Has only a small effect on the rate of reaction with DAPA.; mutation to K: Increases aminotransferase activity toward SAM.; mutation to M: Loss of aminotransferase activity.; mutation to Q: Increases aminotransferase activity toward SAM.
- K274 (= K282) binding substrate; modified: N6-(pyridoxal phosphate)lysine
- G307 (= G315) binding substrate
- PT 308:309 (= PT 316:317) binding pyridoxal 5'-phosphate
- R391 (= R399) binding substrate; mutation to A: Reduces aminotransferase activity.
1mlzA Crystal structure of 7,8-diaminopelargonic acid synthase in complex with the trans-isomer of amiclenomycin. (see paper)
61% identity, 97% coverage: 11:431/432 of query aligns to 4:422/427 of 1mlzA
- active site: Y17 (= Y24), Y144 (= Y152), E210 (= E219), D244 (= D253), A247 (= A256), K273 (= K282), Y397 (= Y406)
- binding pyridoxal-5'-phosphate: G112 (= G119), S113 (= S120), Y144 (= Y152), H145 (= H153), D244 (= D253), I246 (= I255), K273 (= K282), P307 (= P316), T308 (= T317)
- binding trans-amiclenomycin: W52 (= W59), W53 (= W60), Y144 (= Y152), K273 (= K282), R390 (= R399), F392 (= F401)
1mlyA Crystal structure of 7,8-diaminopelargonic acid synthase in complex with the cis isomer of amiclenomycin (see paper)
61% identity, 97% coverage: 11:431/432 of query aligns to 4:422/427 of 1mlyA
- active site: Y17 (= Y24), Y144 (= Y152), E210 (= E219), D244 (= D253), A247 (= A256), K273 (= K282), Y397 (= Y406)
- binding cis-amiclenomycin: W52 (= W59), W53 (= W60), K273 (= K282), R390 (= R399), F392 (= F401)
- binding pyridoxal-5'-phosphate: G112 (= G119), S113 (= S120), Y144 (= Y152), H145 (= H153), D244 (= D253), I246 (= I255), K273 (= K282), P307 (= P316), T308 (= T317)
1dtyA Crystal structure of adenosylmethionine-8-amino-7-oxonanoate aminotransferase with pyridoxal phosphate cofactor.
60% identity, 97% coverage: 11:431/432 of query aligns to 4:423/429 of 1dtyA
- active site: Y17 (= Y24), Y144 (= Y152), E211 (= E219), D245 (= D253), A248 (= A256), K274 (= K282), Y398 (= Y406)
- binding pyridoxal-5'-phosphate: G112 (= G119), S113 (= S120), Y144 (= Y152), H145 (= H153), D245 (= D253), I247 (= I255), K274 (= K282)
1qj3A Crystal structure of 7,8-diaminopelargonic acid synthase in complex with 7-keto-8-aminopelargonic acid (see paper)
59% identity, 97% coverage: 11:431/432 of query aligns to 4:411/416 of 1qj3A
- active site: Y17 (= Y24), Y144 (= Y152), E201 (= E219), D235 (= D253), A238 (= A256), K264 (= K282), Y386 (= Y406)
- binding 7-keto-8-aminopelargonic acid: Y17 (= Y24), W52 (= W59), Y144 (= Y152), K264 (= K282), R379 (= R399), F381 (= F401)
- binding pyridoxal-5'-phosphate: G112 (= G119), S113 (= S120), Y144 (= Y152), H145 (= H153), G146 (= G154), D235 (= D253), I237 (= I255), A238 (= A256), K264 (= K282)
6erkA Crystal structure of diaminopelargonic acid aminotransferase from psychrobacter cryohalolentis (see paper)
51% identity, 97% coverage: 14:431/432 of query aligns to 8:415/420 of 6erkA
4w1vA Crystal structure of 7,8-diaminopelargonic acid synthase (bioa) from mycobacterium tuberculosis, complexed with a thiazole inhibitor (see paper)
54% identity, 96% coverage: 13:425/432 of query aligns to 7:416/425 of 4w1vA
- active site: Y18 (= Y24), Y147 (= Y152), E210 (= E219), D244 (= D253), A247 (= A256), K273 (= K282), Y397 (= Y406)
- binding dimethyl (2R)-5-(3-fluorophenyl)-1H-pyrrolo[1,2-c][1,3]thiazole-6,7-dicarboxylate 2-oxide: P17 (= P23), Y18 (= Y24), W54 (= W59), M81 (= M86), G83 (= G88), Y147 (= Y152), G306 (= G315), P307 (= P316), T308 (= T317), F392 (= F401)
- binding pyridoxal-5'-phosphate: G114 (= G119), S115 (= S120), Y147 (= Y152), H148 (= H153), E210 (= E219), D244 (= D253), I246 (= I255), K273 (= K282)
4cxrA Mycobaterium tuberculosis transaminase bioa complexed with 1-(1,3- benzothiazol-2-yl)methanamine (see paper)
54% identity, 96% coverage: 13:425/432 of query aligns to 7:416/425 of 4cxrA
- active site: Y18 (= Y24), Y147 (= Y152), E210 (= E219), D244 (= D253), A247 (= A256), K273 (= K282), Y397 (= Y406)
- binding 1-(1,3-benzothiazol-2-yl)methanamine: Y18 (= Y24), W54 (= W59), W55 (= W60), A216 (= A225)
- binding pyridoxal-5'-phosphate: G114 (= G119), S115 (= S120), Y147 (= Y152), H148 (= H153), E210 (= E219), D244 (= D253), I246 (= I255), K273 (= K282), P307 (= P316), T308 (= T317)
4cxqA Mycobaterium tuberculosis transaminase bioa complexed with substrate kapa (see paper)
54% identity, 96% coverage: 13:425/432 of query aligns to 7:418/427 of 4cxqA
- active site: Y18 (= Y24), Y149 (= Y152), E212 (= E219), D246 (= D253), A249 (= A256), K275 (= K282), Y399 (= Y406)
- binding 7-keto-8-aminopelargonic acid: W56 (= W59), Y149 (= Y152), G308 (= G315), T310 (= T317), R392 (= R399)
- binding pyridoxal-5'-phosphate: G116 (= G119), S117 (= S120), Y149 (= Y152), H150 (= H153), G151 (= G154), E212 (= E219), D246 (= D253), I248 (= I255), K275 (= K282), P309 (= P316), T310 (= T317)
P9WQ81 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; 7,8-diamino-pelargonic acid aminotransferase; DAPA AT; DAPA aminotransferase; 7,8-diaminononanoate synthase; DANS; 7,8-diaminopelargonic acid synthase; DAPAS; Diaminopelargonic acid synthase; EC 2.6.1.62 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
54% identity, 96% coverage: 13:425/432 of query aligns to 14:426/437 of P9WQ81
- Y25 (= Y24) mutation to A: Does not show detectable activity at 335 nm with SAM, even up to concentrations of 3 mM, and shows approximately 70% reduced activity with high concentrations of DAPA (0.5 mM).
- W64 (= W59) binding S-adenosyl-L-methionine
- Y157 (= Y152) binding S-adenosyl-L-methionine
- K283 (= K282) modified: N6-(pyridoxal phosphate)lysine
- G316 (= G315) binding S-adenosyl-L-methionine
5kgtA Crystal structure of 7,8-diaminopelargonic acid synthase (bioa) from mycobacterium tuberculosis, complexed with an inhibitor optimized from hts lead: 1-[4-[4-(3-chlorophenyl)carbonylpiperidin-1- yl]phenyl]ethanone (see paper)
54% identity, 96% coverage: 13:425/432 of query aligns to 7:419/429 of 5kgtA
- active site: Y18 (= Y24), Y150 (= Y152), E213 (= E219), D247 (= D253), A250 (= A256), K276 (= K282), Y400 (= Y406)
- binding 1-[4-[4-(3-chlorophenyl)carbonylpiperidin-1-yl]phenyl]ethanone: M84 (= M86), G86 (= G88), G309 (= G315), T311 (= T317)
- binding pyridoxal-5'-phosphate: S116 (= S118), G117 (= G119), S118 (= S120), Y150 (= Y152), H151 (= H153), G152 (= G154), E213 (= E219), D247 (= D253), I249 (= I255), K276 (= K282)
5kgsA Crystal structure of 7,8-diaminopelargonic acid synthase (bioa) from mycobacterium tuberculosis, complexed with an inhibitor optimized from hts lead: 5-[4-(1,3-benzodioxol-5-ylcarbonyl)piperazin-1-yl]-2, 3-dihydroinden-1-one (see paper)
54% identity, 96% coverage: 13:425/432 of query aligns to 7:419/429 of 5kgsA
- active site: Y18 (= Y24), Y150 (= Y152), E213 (= E219), D247 (= D253), A250 (= A256), K276 (= K282), Y400 (= Y406)
- binding 5-[4-(1,3-benzodioxol-5-ylcarbonyl)piperazin-1-yl]-2,3-dihydroinden-1-one: P17 (= P23), Y18 (= Y24), W57 (= W59), M84 (= M86), G86 (= G88), Y150 (= Y152), D162 (= D164), G165 (≠ N167), G166 (= G168), P310 (= P316), T311 (= T317), F395 (= F401)
- binding pyridoxal-5'-phosphate: G117 (= G119), S118 (= S120), Y150 (= Y152), H151 (= H153), G152 (= G154), E213 (= E219), D247 (= D253), I249 (= I255), K276 (= K282)
4xjpA Crystal structure of 7,8-diaminopelargonic acid synthase (bioa) from mycobacterium tuberculosis, complexed with an inhibitor optimized from hts lead (see paper)
54% identity, 96% coverage: 13:425/432 of query aligns to 7:419/429 of 4xjpA
- active site: Y18 (= Y24), Y150 (= Y152), E213 (= E219), D247 (= D253), A250 (= A256), K276 (= K282), Y400 (= Y406)
- binding 1-{4-[4-(1,3-benzodioxol-5-ylcarbonyl)piperazin-1-yl]phenyl}ethanone: P17 (= P23), Y18 (= Y24), W57 (= W59), M84 (= M86), G86 (= G88), Y150 (= Y152), G165 (≠ N167), G166 (= G168), A219 (= A225), G220 (= G226), G309 (= G315), F395 (= F401)
- binding pyridoxal-5'-phosphate: G117 (= G119), S118 (= S120), Y150 (= Y152), H151 (= H153), G152 (= G154), E213 (= E219), D247 (= D253), I249 (= I255), K276 (= K282), P310 (= P316), T311 (= T317)
4xjmA Crystal structure of 7,8-diaminopelargonic acid synthase (bioa) from mycobacterium tuberculosis, complexed with a hts lead compound
54% identity, 96% coverage: 13:425/432 of query aligns to 7:419/429 of 4xjmA
- active site: Y18 (= Y24), Y150 (= Y152), E213 (= E219), D247 (= D253), A250 (= A256), K276 (= K282), Y400 (= Y406)
- binding 3-{1-[(5-acetylthiophen-2-yl)carbonyl]piperidin-4-yl}-N-(3-methoxyphenyl)propanamide: P17 (= P23), Y18 (= Y24), W57 (= W59), M84 (= M86), G86 (= G88), Y150 (= Y152), M158 (= M160), G165 (≠ N167), G166 (= G168), M167 (= M169), W171 (≠ F173), M307 (= M313), G309 (= G315), T311 (= T317)
- binding pyridoxal-5'-phosphate: G117 (= G119), S118 (= S120), Y150 (= Y152), H151 (= H153), G152 (= G154), E213 (= E219), D247 (= D253), I249 (= I255), K276 (= K282), P310 (= P316), T311 (= T317)
4xjlA Crystal structure of 7,8-diaminopelargonic acid synthase (bioa) from mycobacterium tuberculosis, complexed with a hts lead compound
54% identity, 96% coverage: 13:425/432 of query aligns to 7:419/429 of 4xjlA
- active site: Y18 (= Y24), Y150 (= Y152), E213 (= E219), D247 (= D253), A250 (= A256), K276 (= K282), Y400 (= Y406)
- binding N-(1,2,3-benzothiadiazol-5-yl)-4-phenylpiperazine-1-carboxamide: P17 (= P23), Y18 (= Y24), W57 (= W59), M84 (= M86), G86 (= G88), Y150 (= Y152), C161 (= C163), G165 (≠ N167), G166 (= G168), A219 (= A225)
- binding pyridoxal-5'-phosphate: G117 (= G119), S118 (= S120), Y150 (= Y152), H151 (= H153), G152 (= G154), E213 (= E219), D247 (= D253), I249 (= I255), K276 (= K282), P310 (= P316), T311 (= T317)
4wygA Crystal structure of 7,8-diaminopelargonic acid synthase (bioa) from mycobacterium tuberculosis complexed with a fragment hit (see paper)
54% identity, 96% coverage: 13:425/432 of query aligns to 7:419/429 of 4wygA
- active site: Y18 (= Y24), Y150 (= Y152), E213 (= E219), D247 (= D253), A250 (= A256), K276 (= K282), Y400 (= Y406)
- binding 1-{4-[(4-chloro-1H-pyrazol-1-yl)methyl]phenyl}methanamine: Y18 (= Y24), W57 (= W59), W58 (= W60), Y150 (= Y152), A219 (= A225), F395 (= F401)
- binding pyridoxal-5'-phosphate: G117 (= G119), S118 (= S120), Y150 (= Y152), H151 (= H153), E213 (= E219), D247 (= D253), I249 (= I255), K276 (= K282), P310 (= P316), T311 (= T317)
4wyeA Crystal structure of 7,8-diaminopelargonic acid synthase (bioa) from mycobacterium tuberculosis complexed with a dsf fragment hit (see paper)
54% identity, 96% coverage: 13:425/432 of query aligns to 7:419/429 of 4wyeA
- active site: Y18 (= Y24), Y150 (= Y152), E213 (= E219), D247 (= D253), A250 (= A256), K276 (= K282), Y400 (= Y406)
- binding phenyl(piperidin-4-yl)methanone: Y18 (= Y24), W57 (= W59), W58 (= W60), A219 (= A225), F395 (= F401), Y400 (= Y406)
- binding pyridoxal-5'-phosphate: G117 (= G119), S118 (= S120), Y150 (= Y152), H151 (= H153), G152 (= G154), E213 (= E219), D247 (= D253), I249 (= I255), K276 (= K282), P310 (= P316), T311 (= T317)
4w1xA Crystal structure of 7,8-diaminopelargonic acid synthase (bioa) from mycobacterium tuberculosis, complexed with 1-(4-(4-(3-chlorobenzoyl) piperazin-1-yl)phenyl)ethanone (see paper)
54% identity, 96% coverage: 13:425/432 of query aligns to 7:419/429 of 4w1xA
- active site: Y18 (= Y24), Y150 (= Y152), E213 (= E219), D247 (= D253), A250 (= A256), K276 (= K282), Y400 (= Y406)
- binding 1-{4-[4-(3-chlorobenzoyl)piperazin-1-yl]phenyl}ethanone: P17 (= P23), Y18 (= Y24), W57 (= W59), M84 (= M86), G86 (= G88), Y150 (= Y152), G165 (≠ N167), G166 (= G168), A219 (= A225), G309 (= G315), T311 (= T317)
- binding pyridoxal-5'-phosphate: G117 (= G119), S118 (= S120), Y150 (= Y152), H151 (= H153), G152 (= G154), E213 (= E219), D247 (= D253), I249 (= I255), K276 (= K282), P310 (= P316), T311 (= T317)
4w1wA Crystal structure of 7,8-diaminopelargonic acid synthase (bioa) from mycobacterium tuberculosis, complexed with 7-(diethylamino)-3- (thiophene-2-carbonyl)-2h-chromen-2-one (see paper)
54% identity, 96% coverage: 13:425/432 of query aligns to 7:419/429 of 4w1wA
- active site: Y18 (= Y24), Y150 (= Y152), E213 (= E219), D247 (= D253), A250 (= A256), K276 (= K282), Y400 (= Y406)
- binding 7-(diethylamino)-3-(thiophen-2-ylcarbonyl)-2H-chromen-2-one: P17 (= P23), Y18 (= Y24), W57 (= W59), M84 (= M86), G86 (= G88), Y150 (= Y152), G165 (≠ N167), G309 (= G315), P310 (= P316), R393 (= R399)
- binding pyridoxal-5'-phosphate: G117 (= G119), S118 (= S120), Y150 (= Y152), H151 (= H153), G152 (= G154), E213 (= E219), D247 (= D253), I249 (= I255), K276 (= K282), P310 (= P316), T311 (= T317)
Query Sequence
>WP_020563406.1 NCBI__GCF_000372865.1:WP_020563406.1
MTIFDTAAWRERLEFDRRHLWHPYTSLSAPDPVYPVESADGVLLTLADGRRLIDGMSSWW
SAIHGYNHPNLNEAATRQLHRMAHVMFGGLTHAPATDLGARLLRLAPEGLETVFFSDSGS
VGVEVALKMAIQYWQARGQSGKNRFIALTGGYHGDTFGAMAVCDPVNGMHHLFTGILPRH
EFAPRPECRFGEPWRAGDAQALEEVIARHADRCAALILEPVVQGAGGMWFYHPEYLAAAR
RLCDQYEILLIADEIATGFGRTGRLFACEHAGIAPDILCLGKALTGGYLSFAATLATSEV
AQTLSSGEARCFMHGPTFMANPLACCIASASIDLLLESDWQRRIARIEQALAKGLEPCRA
LPGVADVRVLGAIGVVETIDPVPVTKVQQALVAAGCWLRPFGRLIYTMPPYIITEEQLET
LTAAMYAAVKSL
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SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory