Comparing WP_020565256.1 NCBI__GCF_000372865.1:WP_020565256.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P27305 Glutamyl-Q tRNA(Asp) synthetase; Glu-Q-RSs; EC 6.1.1.- from Escherichia coli (strain K12) (see paper)
44% identity, 85% coverage: 7:286/328 of query aligns to 16:288/308 of P27305
4a91A Crystal structure of the glutamyl-queuosine trnaasp synthetase from e. Coli complexed with l-glutamate (see paper)
44% identity, 85% coverage: 7:286/328 of query aligns to 4:274/290 of 4a91A
P04805 Glutamate--tRNA ligase; Glutamyl-tRNA synthetase; GluRS; EC 6.1.1.17 from Escherichia coli (strain K12) (see 4 papers)
39% identity, 72% coverage: 10:246/328 of query aligns to 6:247/471 of P04805
8i9iA Glutamyl-tRNA synthetase from escherichia coli bound to glutamate and zinc
39% identity, 72% coverage: 10:246/328 of query aligns to 6:247/468 of 8i9iA
2cfoA Non-discriminating glutamyl-tRNA synthetase from thermosynechococcus elongatus in complex with glu (see paper)
35% identity, 87% coverage: 10:294/328 of query aligns to 5:306/484 of 2cfoA
Q8DLI5 Glutamate--tRNA ligase; Glutamyl-tRNA synthetase; GluRS; EC 6.1.1.17 from Thermosynechococcus vestitus (strain NIES-2133 / IAM M-273 / BP-1) (see paper)
35% identity, 87% coverage: 10:294/328 of query aligns to 6:307/485 of Q8DLI5
4g6zA Crystal structure of a glutamyl-tRNA synthetase glurs from burkholderia thailandensis bound to l-glutamate (see paper)
36% identity, 76% coverage: 10:258/328 of query aligns to 6:249/380 of 4g6zA
3al0C Crystal structure of the glutamine transamidosome from thermotoga maritima in the glutamylation state. (see paper)
35% identity, 75% coverage: 10:255/328 of query aligns to 106:351/564 of 3al0C
Sites not aligning to the query:
4griB Crystal structure of a glutamyl-tRNA synthetase glurs from borrelia burgdorferi bound to glutamic acid and zinc (see paper)
32% identity, 70% coverage: 10:240/328 of query aligns to 5:254/485 of 4griB
2cv2A Glutamyl-tRNA synthetase from thermus thermophilus in complex with tRNA(glu) and an enzyme inhibitor, glu-ams (see paper)
31% identity, 71% coverage: 8:240/328 of query aligns to 3:247/468 of 2cv2A
Sites not aligning to the query:
2cv1A Glutamyl-tRNA synthetase from thermus thermophilus in complex with tRNA(glu), atp, and an analog of l-glutamate: a quaternary complex
31% identity, 71% coverage: 8:240/328 of query aligns to 3:247/468 of 2cv1A
Sites not aligning to the query:
2cuzA Glutamyl-tRNA synthetase from thermus thermophilus in complex with l- glutamate (see paper)
31% identity, 71% coverage: 8:240/328 of query aligns to 3:247/468 of 2cuzA
1n78A Crystal structure of thermus thermophilus glutamyl-tRNA synthetase complexed with tRNA(glu) and glutamol-amp. (see paper)
31% identity, 71% coverage: 8:240/328 of query aligns to 3:247/468 of 1n78A
Sites not aligning to the query:
1j09A Crystal structure of thermus thermophilus glutamyl-tRNA synthetase complexed with atp and glu (see paper)
31% identity, 71% coverage: 8:240/328 of query aligns to 3:247/468 of 1j09A
P27000 Glutamate--tRNA ligase; Glutamyl-tRNA synthetase; GluRS; EC 6.1.1.17 from Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8) (see paper)
31% identity, 71% coverage: 8:240/328 of query aligns to 3:247/468 of P27000
Sites not aligning to the query:
1g59A Glutamyl-tRNA synthetase complexed with tRNA(glu). (see paper)
31% identity, 71% coverage: 8:240/328 of query aligns to 3:247/468 of 1g59A
Sites not aligning to the query:
6brlA Crystal structure of a glutamate tRNA ligase from elizabethkingia meningosepticum ccug26117 in complex with its amino acid
32% identity, 70% coverage: 10:240/328 of query aligns to 6:262/502 of 6brlA
8vc5A Crystal structure of glutamyl-tRNA synthetase glurs from pseudomonas aeruginosa (zinc bound)
30% identity, 73% coverage: 10:250/328 of query aligns to 7:265/488 of 8vc5A
3aiiA Archaeal non-discriminating glutamyl-tRNA synthetase from methanothermobacter thermautotrophicus (see paper)
30% identity, 66% coverage: 10:225/328 of query aligns to 14:228/455 of 3aiiA
Sites not aligning to the query:
P46655 Glutamate--tRNA ligase, cytoplasmic; Glutamyl-tRNA synthetase; (c)ERS; GluRS; P85; EC 6.1.1.17 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see paper)
23% identity, 64% coverage: 8:216/328 of query aligns to 203:418/708 of P46655
Sites not aligning to the query:
>WP_020565256.1 NCBI__GCF_000372865.1:WP_020565256.1
MPEQPSYIGRFAPSPTGPLHLGSLSTALAGYLQARSQQGQWLLRIDDLDTPRNAPDASDG
ILATLDTYGLHWDDEADYQSRHLAEYEHLLHQLQQDGLAYPCTCTRKSLTALHAEPAAGD
VYPGLCRNQRHPATSPYSLRIKTDPRIVTFEDQLQGTISHRLAEQHGDFIIKRRDQIIAY
QFAVVVDDARQGITEVVRGFDLLQETPKQIFLQQILGFSSPGYRHVPVIVDRDGRKLSKQ
TLAEAVALTEPETVLFQLLGLLRQRPPDELRGAPPTELLDWAIGHWNPEPLRNSRTIRPE
NLSNTGSPHSSSHSGHAHVGHQTLPGNP
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory