SitesBLAST
Comparing WP_023430621.1 NCBI__GCF_000496075.1:WP_023430621.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
P81601 Alcohol dehydrogenase class-3 chain L; Alcohol dehydrogenase class-III chain L; Glutathione-dependent formaldehyde dehydrogenase; FALDH; FDH; GSH-FDH; S-(hydroxymethyl)glutathione dehydrogenase; EC 1.1.1.1; EC 1.1.1.-; EC 1.1.1.284 from Gadus morhua (Atlantic cod) (see 2 papers)
57% identity, 100% coverage: 1:375/375 of query aligns to 7:375/375 of P81601
Sites not aligning to the query:
- 1 modified: N-acetylalanine
P80467 Alcohol dehydrogenase class-3; Alcohol dehydrogenase class-III; Glutathione-dependent formaldehyde dehydrogenase; FALDH; FDH; GSH-FDH; S-(hydroxymethyl)glutathione dehydrogenase; EC 1.1.1.1; EC 1.1.1.-; EC 1.1.1.284 from Saara hardwickii (Indian spiny-tailed lizard) (Uromastyx hardwickii) (see paper)
57% identity, 100% coverage: 1:375/375 of query aligns to 5:373/373 of P80467
Sites not aligning to the query:
- 1 modified: N-acetylalanine
P81600 Alcohol dehydrogenase class-3 chain H; Alcohol dehydrogenase class-III chain H; Glutathione-dependent formaldehyde dehydrogenase; FALDH; FDH; GSH-FDH; S-(hydroxymethyl)glutathione dehydrogenase; EC 1.1.1.1; EC 1.1.1.-; EC 1.1.1.284 from Gadus morhua (Atlantic cod) (see 2 papers)
57% identity, 100% coverage: 1:375/375 of query aligns to 7:375/375 of P81600
Sites not aligning to the query:
- 1 modified: N-acetylalanine
P12711 Alcohol dehydrogenase class-3; Alcohol dehydrogenase 2; Alcohol dehydrogenase 5; Alcohol dehydrogenase B2; ADH-B2; Alcohol dehydrogenase class-III; Glutathione-dependent formaldehyde dehydrogenase; FALDH; FDH; GSH-FDH; S-(hydroxymethyl)glutathione dehydrogenase; EC 1.1.1.1; EC 1.1.1.-; EC 1.1.1.284 from Rattus norvegicus (Rat) (see 2 papers)
58% identity, 99% coverage: 1:373/375 of query aligns to 6:372/374 of P12711
Sites not aligning to the query:
- 1 modified: Initiator methionine, Removed
- 2 modified: N-acetylalanine
2fzeA Crystal structure of the binary complex of human glutathione-dependent formaldehyde dehydrogenase with adp-ribose (see paper)
58% identity, 99% coverage: 1:373/375 of query aligns to 5:371/373 of 2fzeA
- active site: C44 (= C40), H45 (= H41), T46 (= T42), Y49 (≠ F45), H66 (= H62), E67 (= E63), C96 (= C92), C99 (= C95), C102 (= C98), C110 (= C106), R114 (= R110), C173 (= C169), T177 (= T173), R368 (= R370)
- binding adenosine-5-diphosphoribose: G200 (= G196), V202 (≠ I198), D222 (= D218), I223 (≠ L219), I268 (≠ T270), G292 (= G294)
- binding phosphate ion: K83 (≠ R79), K158 (= K154)
- binding zinc ion: H66 (= H62), C96 (= C92), C99 (= C95), C102 (= C98), C110 (= C106), C173 (= C169)
1mc5A Ternary complex of human glutathione-dependent formaldehyde dehydrogenase with s-(hydroxymethyl)glutathione and nadh (see paper)
58% identity, 99% coverage: 1:373/375 of query aligns to 5:371/373 of 1mc5A
- active site: C44 (= C40), H45 (= H41), T46 (= T42), Y49 (≠ F45), H66 (= H62), E67 (= E63), C96 (= C92), C99 (= C95), C102 (= C98), C110 (= C106), R114 (= R110), C173 (= C169), T177 (= T173), R368 (= R370)
- binding 2-amino-4-[1-carboxymethyl-carbamoyl)-2-hydroxymethylsulfanyl-ethylcarbamoyl]-butyric acid: T46 (= T42), P56 (= P52), E57 (= E53), H66 (= H62), Y92 (= Y88), R114 (= R110), C173 (= C169), V293 (= V295)
- binding nicotinamide-adenine-dinucleotide: C44 (= C40), H45 (= H41), T46 (= T42), C173 (= C169), T177 (= T173), G198 (= G194), G201 (= G197), V202 (≠ I198), D222 (= D218), I223 (≠ L219), K227 (= K223), C267 (= C269), I268 (≠ T270), V291 (≠ I293), G292 (= G294), V293 (= V295), A317 (= A319), R368 (= R370)
- binding zinc ion: C44 (= C40), H66 (= H62), C96 (= C92), C99 (= C95), C102 (= C98), C110 (= C106), C173 (= C169)
1ma0A Ternary complex of human glutathione-dependent formaldehyde dehydrogenase with NAD+ and dodecanoic acid (see paper)
58% identity, 99% coverage: 1:373/375 of query aligns to 5:371/373 of 1ma0A
- active site: C44 (= C40), H45 (= H41), T46 (= T42), Y49 (≠ F45), H66 (= H62), E67 (= E63), C96 (= C92), C99 (= C95), C102 (= C98), C110 (= C106), R114 (= R110), C173 (= C169), T177 (= T173), R368 (= R370)
- binding nicotinamide-adenine-dinucleotide: H45 (= H41), T177 (= T173), G200 (= G196), V202 (≠ I198), D222 (= D218), I223 (≠ L219), C267 (= C269), I268 (≠ T270), V291 (≠ I293), G292 (= G294), V293 (= V295), A317 (= A319), F318 (= F320)
- binding zinc ion: C44 (= C40), H66 (= H62), E67 (= E63), C96 (= C92), C99 (= C95), C102 (= C98), C110 (= C106), C173 (= C169)
1m6wA Binary complex of human glutathione-dependent formaldehyde dehydrogenase and 12-hydroxydodecanoic acid (see paper)
58% identity, 99% coverage: 1:373/375 of query aligns to 5:371/373 of 1m6wA
- active site: C44 (= C40), H45 (= H41), T46 (= T42), Y49 (≠ F45), H66 (= H62), E67 (= E63), C96 (= C92), C99 (= C95), C102 (= C98), C110 (= C106), R114 (= R110), C173 (= C169), T177 (= T173), R368 (= R370)
- binding 12-hydroxydodecanoic acid: T46 (= T42), H66 (= H62), Y92 (= Y88), Q111 (≠ T107), R114 (= R110), C173 (= C169)
- binding zinc ion: C44 (= C40), H66 (= H62), C96 (= C92), C99 (= C95), C102 (= C98), C110 (= C106), C173 (= C169)
P11766 Alcohol dehydrogenase class-3; Alcohol dehydrogenase 5; Alcohol dehydrogenase class chi chain; Alcohol dehydrogenase class-III; Glutathione-dependent formaldehyde dehydrogenase; FALDH; FDH; GSH-FDH; S-(hydroxymethyl)glutathione dehydrogenase; EC 1.1.1.1; EC 1.1.1.-; EC 1.1.1.284 from Homo sapiens (Human) (see 3 papers)
58% identity, 99% coverage: 1:373/375 of query aligns to 6:372/374 of P11766
- C45 (= C40) binding Zn(2+)
- H67 (= H62) binding Zn(2+)
- C97 (= C92) binding Zn(2+)
- C100 (= C95) binding Zn(2+)
- C103 (= C98) binding Zn(2+)
- C111 (= C106) binding Zn(2+)
- R115 (= R110) Important for FDH activity and activation by fatty acids; mutation R->A,D: Loss of FDH activity and loss of activation by fatty acids.
- L163 (≠ D158) to S: in dbSNP:rs28730623
- C174 (= C169) binding Zn(2+)
- V309 (= V310) to I: in dbSNP:rs28730628
Sites not aligning to the query:
- 1 modified: Initiator methionine, Removed
8gv3A The cryo-em structure of gsnor with nyy001
58% identity, 99% coverage: 1:373/375 of query aligns to 4:370/373 of 8gv3A
- binding nicotinamide-adenine-dinucleotide: C172 (= C169), V201 (≠ I198), D221 (= D218), I222 (≠ L219), C266 (= C269), I267 (≠ T270), V290 (≠ I293), G291 (= G294)
- binding (4P)-4-{2-[4-(1H-imidazol-1-yl)phenyl]-5-[3-oxo-3-(2-oxo-1,3-thiazolidin-3-yl)propyl]-1H-pyrrol-1-yl}-3-methylbenzamide: T45 (= T42), Y91 (= Y88), I92 (≠ T89), P93 (= P90), L108 (= L105), C109 (= C106), M139 (= M136), C172 (= C169)
- binding zinc ion: C43 (= C40), H65 (= H62), C101 (= C98), C109 (= C106), C172 (= C169)
3qj5A S-nitrosoglutathione reductase (gsnor) in complex with n6022 (see paper)
58% identity, 99% coverage: 1:373/375 of query aligns to 4:370/372 of 3qj5A
- active site: C43 (= C40), H44 (= H41), T45 (= T42), Y48 (≠ F45), H65 (= H62), E66 (= E63), C95 (= C92), C98 (= C95), C101 (= C98), C109 (= C106), R113 (= R110), C172 (= C169), T176 (= T173), R367 (= R370)
- binding 3-{1-(4-carbamoyl-2-methylphenyl)-5-[4-(1H-imidazol-1-yl)phenyl]-1H-pyrrol-2-yl}propanoic acid: C43 (= C40), T45 (= T42), H65 (= H62), Y91 (= Y88), I92 (≠ T89), Q110 (≠ T107), Q116 (= Q113), C172 (= C169)
- binding pentane-1,5-diamine: H44 (= H41), Y48 (≠ F45), V292 (= V295), A294 (≠ P297)
- binding nicotinamide-adenine-dinucleotide: C172 (= C169), T176 (= T173), G199 (= G196), V201 (≠ I198), D221 (= D218), I222 (≠ L219), C266 (= C269), I267 (≠ T270), V290 (≠ I293), G291 (= G294), V292 (= V295), A316 (= A319), F317 (= F320)
- binding zinc ion: C43 (= C40), H65 (= H62), C95 (= C92), C98 (= C95), C101 (= C98), C109 (= C106), C172 (= C169)
P19854 Alcohol dehydrogenase class-3; Alcohol dehydrogenase 5; Alcohol dehydrogenase class-III; Glutathione-dependent formaldehyde dehydrogenase; FALDH; FDH; GSH-FDH; S-(hydroxymethyl)glutathione dehydrogenase; EC 1.1.1.1; EC 1.1.1.-; EC 1.1.1.284 from Equus caballus (Horse) (see 2 papers)
58% identity, 99% coverage: 1:373/375 of query aligns to 6:372/374 of P19854
Sites not aligning to the query:
- 1 modified: Initiator methionine, Removed
- 2 modified: N-acetylserine
P81431 Alcohol dehydrogenase class-3; Alcohol dehydrogenase class-III; Glutathione-dependent formaldehyde dehydrogenase; FALDH; FDH; GSH-FDH; S-(hydroxymethyl)glutathione dehydrogenase; EC 1.1.1.1; EC 1.1.1.-; EC 1.1.1.284 from Octopus vulgaris (Common octopus) (see paper)
55% identity, 99% coverage: 1:373/375 of query aligns to 8:374/378 of P81431
Sites not aligning to the query:
- 1 modified: N-acetylthreonine
8co4C Crystal structure of apo s-nitrosoglutathione reductase from arabidopsis thalina (see paper)
55% identity, 99% coverage: 4:373/375 of query aligns to 11:375/379 of 8co4C
Q96533 Alcohol dehydrogenase class-3; Alcohol dehydrogenase class-III; Glutathione-dependent formaldehyde dehydrogenase; FALDH; FDH; GSH-FDH; Nitrosoglutathione reductase; S-(hydroxymethyl)glutathione dehydrogenase; EC 1.1.1.1; EC 1.1.1.-; EC 1.1.1.-; EC 1.1.1.284 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
55% identity, 99% coverage: 4:373/375 of query aligns to 11:375/379 of Q96533
- C47 (= C40) binding Zn(2+)
- H48 (= H41) binding NAD(+)
- H69 (= H62) binding Zn(2+)
- E70 (= E63) binding Zn(2+)
- C99 (= C92) binding Zn(2+)
- C102 (= C95) binding Zn(2+)
- C105 (= C98) binding Zn(2+)
- C113 (= C106) binding Zn(2+)
- C177 (= C169) binding Zn(2+)
- GLGTVG 202:207 (≠ GLGGIG 194:199) binding NAD(+)
- D226 (= D218) binding NAD(+)
- K231 (= K223) binding NAD(+)
- I272 (≠ T270) binding NAD(+)
- VGV 295:297 (≠ IGV 293:295) binding NAD(+)
- TAF 320:322 (= TAF 318:320) binding NAD(+)
- R372 (= R370) binding NAD(+)
4gl4A Crystal structure of oxidized s-nitrosoglutathione reductase from arabidopsis thalina, complex with nadh
55% identity, 99% coverage: 1:373/375 of query aligns to 7:374/378 of 4gl4A
- active site: C46 (= C40), H47 (= H41), T48 (= T42), Y51 (≠ F45), H68 (= H62), E69 (= E63), C98 (= C92), C101 (= C95), C104 (= C98), C112 (= C106), R116 (= R110), C176 (= C169), T180 (= T173), R371 (= R370)
- binding 1,4-dihydronicotinamide adenine dinucleotide: H47 (= H41), Y94 (= Y88), T180 (= T173), G203 (= G196), V205 (≠ I198), D225 (= D218), I226 (≠ L219), C270 (= C269), I271 (≠ T270), V294 (≠ I293), G295 (= G294), V296 (= V295), A320 (= A319)
- binding zinc ion: C46 (= C40), H68 (= H62), E69 (= E63), C98 (= C92), C101 (= C95), C104 (= C98), C112 (= C106), C176 (= C169)
3ukoA Crystal structure of s-nitrosoglutathione reductase from arabidopsis thaliana, complex with nadh
55% identity, 99% coverage: 1:373/375 of query aligns to 7:374/378 of 3ukoA
- active site: C46 (= C40), H47 (= H41), T48 (= T42), Y51 (≠ F45), H68 (= H62), E69 (= E63), C98 (= C92), C101 (= C95), C104 (= C98), C112 (= C106), R116 (= R110), C176 (= C169), T180 (= T173), R371 (= R370)
- binding nicotinamide-adenine-dinucleotide: H47 (= H41), T180 (= T173), G203 (= G196), V205 (≠ I198), D225 (= D218), I226 (≠ L219), K230 (= K223), C270 (= C269), I271 (≠ T270), V294 (≠ I293), G295 (= G294), V296 (= V295), A320 (= A319)
- binding zinc ion: C46 (= C40), H68 (= H62), E69 (= E63), C98 (= C92), C101 (= C95), C104 (= C98), C112 (= C106), C176 (= C169)
4dl9A Crystal structure of s-nitrosoglutathione reductase from tomato (solanum lycopersicum) in complex with NAD+ (see paper)
55% identity, 99% coverage: 4:373/375 of query aligns to 11:375/379 of 4dl9A
- active site: C47 (= C40), H48 (= H41), T49 (= T42), Y52 (≠ F45), H69 (= H62), E70 (= E63), C99 (= C92), C102 (= C95), C105 (= C98), C113 (= C106), R117 (= R110), C177 (= C169), T181 (= T173), R372 (= R370)
- binding nicotinamide-adenine-dinucleotide: Y95 (= Y88), T181 (= T173), G204 (= G196), V206 (≠ I198), D226 (= D218), I227 (≠ L219), K231 (= K223), C271 (= C269), I272 (≠ T270), V295 (≠ I293), G296 (= G294), V297 (= V295), A321 (= A319), F322 (= F320)
- binding zinc ion: C47 (= C40), H69 (= H62), E70 (= E63), C99 (= C92), C102 (= C95), C105 (= C98), C113 (= C106), C177 (= C169)
P80572 Alcohol dehydrogenase class-3; Alcohol dehydrogenase class-III; Glutathione-dependent formaldehyde dehydrogenase; FALDH; FDH; GSH-FDH; S-(hydroxymethyl)glutathione dehydrogenase; EC 1.1.1.1; EC 1.1.1.-; EC 1.1.1.284 from Pisum sativum (Garden pea) (Lathyrus oleraceus) (see 2 papers)
54% identity, 99% coverage: 4:373/375 of query aligns to 10:374/378 of P80572
Sites not aligning to the query:
- 1 modified: N-acetylalanine
7aauC Crystal structure of nitrosoglutathione reductase from chlamydomonas reinhardtii in complex with NAD+ (see paper)
55% identity, 100% coverage: 1:375/375 of query aligns to 9:378/378 of 7aauC
- active site: C48 (= C40), T50 (= T42), Y53 (≠ F45), H70 (= H62), C178 (= C169)
- binding nicotinamide-adenine-dinucleotide: T182 (= T173), G203 (= G194), G205 (= G196), V207 (≠ I198), D227 (= D218), I228 (≠ L219), C272 (= C269), I273 (≠ T270), V296 (≠ I293), G297 (= G294), V298 (= V295), A322 (= A319), F323 (= F320), R373 (= R370)
- binding zinc ion: C48 (= C40), H70 (= H62), C100 (= C92), C103 (= C95), C106 (= C98), C114 (= C106), C178 (= C169)
Query Sequence
>WP_023430621.1 NCBI__GCF_000496075.1:WP_023430621.1
MESRAAVAFEAGKPLEVATVRLEGPKEGEVLVEIKATGICHTDEFTRSGADPEGIFPAIL
GHEGAGVVVDVGPGVRSLRKGDHVIPLYTPECRECPSCLSRKTNLCTAIRTTQGQGLMPD
GTSRFSLDGKPIHHYMGTSTFSNFTVLPEIAVAKIREDAPFDKVCYIGCGVTTGIGAVIN
TAKVEAGATAVVFGLGGIGLNVIQGLRLAGADMIIGVDLNNDKKEWGERFGMTHFVNPKE
VGSDLVPHLVNMTKRGADQIGGADYTFDCTGNVTVMRQALECAHRGWGQSIVIGVAPAGA
EISTRPFQLVTGRVWKGTAFGGARGRTDVPKIVEWYMEGKIEIDPMITHTMPLDDINKGF
DLMHHGESIRSVVLF
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SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory