SitesBLAST
Comparing WP_024487877.1 NCBI__GCF_002893965.1:WP_024487877.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
4jlwA Crystal structure of formaldehyde dehydrogenase from pseudomonas aeruginosa (see paper)
41% identity, 97% coverage: 2:367/379 of query aligns to 3:380/395 of 4jlwA
- binding nicotinamide-adenine-dinucleotide: C45 (= C38), G46 (= G39), S47 (= S40), H50 (= H43), D168 (= D161), T172 (= T165), G194 (= G187), P195 (= P188), V196 (= V189), D216 (= D209), R221 (= R214), V261 (= V253), R266 (vs. gap), H268 (vs. gap), V281 (≠ T269), P298 (≠ V286), L300 (≠ I288), Q336 (= Q324), T337 (≠ A325)
- binding zinc ion: C45 (= C38), H66 (= H59), C96 (= C89), C99 (= C92), C102 (= C95), C110 (= C103), D168 (= D161)
P46154 Glutathione-independent formaldehyde dehydrogenase; FALDH; FDH; Formaldehyde dismutase; EC 1.2.1.46; EC 1.2.98.1 from Pseudomonas putida (Arthrobacter siderocapsulatus) (see paper)
39% identity, 97% coverage: 2:367/379 of query aligns to 5:382/399 of P46154
- C47 (= C38) binding Zn(2+)
- GSDQH 48:52 (≠ GSDLH 39:43) binding NAD(+)
- H68 (= H59) binding Zn(2+)
- C98 (= C89) binding Zn(2+)
- C101 (= C92) binding Zn(2+)
- C104 (= C95) binding Zn(2+)
- C112 (= C103) binding Zn(2+)
- V198 (= V189) binding NAD(+)
- D218 (= D209) binding NAD(+)
- R223 (= R214) binding NAD(+)
- V263 (= V253) binding NAD(+)
- RGH 268:270 (vs. gap) binding NAD(+)
- PGL 300:302 (≠ VGI 286:288) binding NAD(+)
- GQT 337:339 (≠ GQA 323:325) binding NAD(+)
1kolA Crystal structure of formaldehyde dehydrogenase (see paper)
39% identity, 97% coverage: 2:367/379 of query aligns to 3:380/396 of 1kolA
- active site: C45 (= C38), G46 (= G39), S47 (= S40), H50 (= H43), H66 (= H59), E67 (= E60), C96 (= C89), C99 (= C92), C102 (= C95), C110 (= C103), N114 (≠ D109), D168 (= D161), T172 (= T165)
- binding nicotinamide-adenine-dinucleotide: C45 (= C38), G46 (= G39), S47 (= S40), H50 (= H43), F92 (= F85), D168 (= D161), T172 (= T165), G192 (= G185), G194 (= G187), P195 (= P188), V196 (= V189), D216 (= D209), L217 (≠ R210), R221 (= R214), A260 (≠ C252), V261 (= V253), R266 (vs. gap), H268 (vs. gap), V281 (≠ T269), P298 (≠ V286), L300 (≠ I288), Q336 (= Q324), T337 (≠ A325)
- binding zinc ion: C45 (= C38), H66 (= H59), C96 (= C89), C99 (= C92), C102 (= C95), C110 (= C103), D168 (= D161)
Sites not aligning to the query:
Q52078 Formaldehyde dismutase; EC 1.2.98.1 from Pseudomonas putida (Arthrobacter siderocapsulatus) (see paper)
39% identity, 96% coverage: 2:366/379 of query aligns to 5:381/399 of Q52078
- C46 (= C38) binding Zn(2+)
- GSDQH 47:51 (≠ GSDLH 39:43) binding NAD(+)
- H67 (= H59) binding Zn(2+)
- C97 (= C89) binding Zn(2+)
- C100 (= C92) binding Zn(2+)
- C103 (= C95) binding Zn(2+)
- C111 (= C103) binding Zn(2+)
- D170 (= D161) binding Zn(2+)
- T174 (= T165) binding NAD(+)
- PV 197:198 (= PV 188:189) binding NAD(+)
- DQ 218:219 (≠ DR 209:210) binding NAD(+)
- R223 (= R214) binding NAD(+)
- V263 (= V253) binding NAD(+)
- H268 (= H258) binding NAD(+)
- P299 (≠ V286) binding NAD(+)
- PGI 299:301 (≠ VGI 286:288) binding NAD(+)
- GMA 336:338 (≠ GQA 323:325) binding NAD(+)
Sites not aligning to the query:
- 1 modified: Initiator methionine, Removed
- 2:399 modified: mature protein, Formaldehyde dismutase
2dphA Crystal structure of formaldehyde dismutase
39% identity, 96% coverage: 2:366/379 of query aligns to 4:380/398 of 2dphA
- active site: C45 (= C38), G46 (= G39), S47 (= S40), H50 (= H43), H66 (= H59), E67 (= E60), C96 (= C89), C99 (= C92), C102 (= C95), C110 (= C103), L114 (≠ H107), S168 (= S160), D169 (= D161), P172 (= P164)
- binding nicotinamide-adenine-dinucleotide: C45 (= C38), G46 (= G39), S47 (= S40), H50 (= H43), F92 (= F85), D169 (= D161), T173 (= T165), A192 (≠ Y184), G193 (= G185), G195 (= G187), P196 (= P188), V197 (= V189), G216 (≠ V208), D217 (= D209), Q218 (≠ R210), R222 (= R214), L236 (≠ D228), V262 (= V253), H267 (= H258), P298 (≠ V286), G299 (= G287), I300 (= I288), A337 (= A325)
- binding zinc ion: C45 (= C38), H66 (= H59), C96 (= C89), C99 (= C92), C102 (= C95), C110 (= C103), D169 (= D161)
Sites not aligning to the query:
4cpdA Alcohol dehydrogenase tadh from thermus sp. Atn1
36% identity, 97% coverage: 1:369/379 of query aligns to 1:337/346 of 4cpdA
- active site: C38 (= C38), G39 (= G39), S40 (= S40), H43 (= H43), H59 (= H59), E60 (= E60), C89 (= C89), C92 (= C92), C95 (= C95), C103 (= C103), G107 (≠ A115), D152 (= D161), T156 (= T165)
- binding nicotinamide-adenine-dinucleotide: G39 (= G39), S40 (= S40), T156 (= T165), G178 (= G187), P179 (= P188), V180 (= V189), D200 (= D209), R201 (= R210), R205 (= R214), A243 (≠ C252), V244 (= V253), V266 (= V286), V268 (≠ I288), L292 (≠ Q324), A293 (= A325), F333 (= F365)
- binding zinc ion: C38 (= C38), H59 (= H59), C89 (= C89), C92 (= C92), C95 (= C95), C103 (= C103), D152 (= D161)
Sites not aligning to the query:
5ylnA Zinc dependent alcohol dehydrogenase 2 from streptococcus pneumonia - apo form
31% identity, 99% coverage: 1:377/379 of query aligns to 5:341/348 of 5ylnA
7y9pA Xylitol dehydrogenase s96c/s99c/y102c mutant(thermostabilized form) from pichia stipitis (see paper)
33% identity, 67% coverage: 3:256/379 of query aligns to 5:250/357 of 7y9pA
6schC Nadh-dependent variant of cbadh (see paper)
35% identity, 60% coverage: 22:248/379 of query aligns to 21:238/355 of 6schC
- active site: C37 (= C38), S39 (= S40), H42 (= H43), H59 (= H59), D150 (= D161)
- binding nicotinamide-adenine-dinucleotide: T38 (≠ G39), W110 (≠ A115), D150 (= D161), T154 (= T165), G174 (= G185), V178 (= V189), D198 (= D209), Y199 (≠ R210), R200 (≠ H211)
- binding zinc ion: C37 (= C38), H59 (= H59), D150 (= D161)
Sites not aligning to the query:
1kevA Structure of NADP-dependent alcohol dehydrogenase (see paper)
34% identity, 60% coverage: 22:248/379 of query aligns to 21:238/351 of 1kevA
- active site: C37 (= C38), T38 (≠ G39), S39 (= S40), H42 (= H43), H59 (= H59), E60 (= E60), D89 (≠ C89), S92 (≠ C92), V95 (≠ C95), S103 (≠ P108), D150 (= D161), T154 (= T165)
- binding nadph dihydro-nicotinamide-adenine-dinucleotide phosphate: T38 (≠ G39), D150 (= D161), I175 (≠ A186), G176 (= G187), V178 (= V189), S199 (≠ R210), R200 (≠ H211), Y218 (≠ S229)
- binding zinc ion: C37 (= C38), H59 (= H59), D150 (= D161)
Sites not aligning to the query:
P25984 NADP-dependent isopropanol dehydrogenase; CbADH; EC 1.1.1.80 from Clostridium beijerinckii (Clostridium MP) (see 3 papers)
34% identity, 60% coverage: 22:248/379 of query aligns to 21:238/351 of P25984
- C37 (= C38) binding Zn(2+)
- H59 (= H59) binding Zn(2+)
- E60 (= E60) binding Zn(2+)
- D150 (= D161) binding Zn(2+)
- IGAV 175:178 (≠ AGPV 186:189) binding NADP(+)
- GSR 198:200 (≠ DRH 209:211) binding NADP(+)
- Y218 (≠ S229) binding NADP(+)
Sites not aligning to the query:
- 265:267 binding NADP(+)
- 340 binding NADP(+)
P07913 L-threonine 3-dehydrogenase; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Escherichia coli (strain K12) (see paper)
30% identity, 99% coverage: 1:377/379 of query aligns to 1:338/341 of P07913