Comparing WP_024851555.1 NCBI__GCF_000526715.1:WP_024851555.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
6qp3A Crystal structure of the plp-bound c-s lyase from bacillus subtilis (strain 168) (see paper)
40% identity, 98% coverage: 3:392/398 of query aligns to 2:386/387 of 6qp3A
4dq6A Crystal structure of plp-bound putative aminotransferase from clostridium difficile 630
36% identity, 98% coverage: 3:392/398 of query aligns to 4:387/388 of 4dq6A
3l8aB Crystal structure of metc from streptococcus mutans
40% identity, 92% coverage: 22:386/398 of query aligns to 19:377/385 of 3l8aB
3b1eA Crystal structure of betac-s lyase from streptococcus anginosus in complex with l-serine: alpha-aminoacrylate form (see paper)
38% identity, 89% coverage: 30:383/398 of query aligns to 28:376/387 of 3b1eA
3b1dA Crystal structure of betac-s lyase from streptococcus anginosus in complex with l-serine: external aldimine form (see paper)
38% identity, 89% coverage: 30:383/398 of query aligns to 28:376/387 of 3b1dA
3b1cA Crystal structure of betac-s lyase from streptococcus anginosus: internal aldimine form (see paper)
38% identity, 89% coverage: 30:383/398 of query aligns to 28:376/387 of 3b1cA
7qugA Crystal structure of carbon-sulfur lyase fnapatb1 from fusobacterium nucleatum subspecies animalis in complex with allyl-cysteine (see paper)
33% identity, 100% coverage: 1:397/398 of query aligns to 1:392/397 of 7qugA
1c7oA Crystal structure of cystalysin from treponema denticola contains a pyridoxal 5'-phosphate-l-aminoethoxyvinylglycine complex (see paper)
31% identity, 92% coverage: 28:395/398 of query aligns to 31:393/394 of 1c7oA
Sites not aligning to the query:
1c7nA Crystal structure of cystalysin from treponema denticola contains a pyridoxal 5'-phosphate cofactor (see paper)
31% identity, 92% coverage: 28:395/398 of query aligns to 31:393/394 of 1c7nA
6qp1B Crystal structure of the plp-bound c-s lyase in the external aldimine form from staphylococcus hominis complexed with an inhibitor, l- cycloserine. (see paper)
32% identity, 98% coverage: 3:392/398 of query aligns to 9:397/398 of 6qp1B
5z0qC Crystal structure of ovob (see paper)
31% identity, 98% coverage: 3:394/398 of query aligns to 2:377/379 of 5z0qC
6qp2A Crystal structure of the plp-bound c-s lyase from staphylococcus hominis (see paper)
32% identity, 98% coverage: 3:392/398 of query aligns to 2:378/383 of 6qp2A
8bobA Structural basis for negative regulation of the maltose system (see paper)
27% identity, 99% coverage: 1:395/398 of query aligns to 1:389/390 of 8bobA
P23256 Protein MalY; EC 4.4.1.13 from Escherichia coli (strain K12) (see 2 papers)
27% identity, 99% coverage: 1:395/398 of query aligns to 1:389/390 of P23256
1gdeA Crystal structure of pyrococcus protein a-1 e-form (see paper)
22% identity, 94% coverage: 19:393/398 of query aligns to 13:383/388 of 1gdeA
1gd9A Crystall structure of pyrococcus protein-a1 (see paper)
22% identity, 94% coverage: 19:393/398 of query aligns to 13:383/388 of 1gd9A
5wmiA Arabidopsis thaliana prephenate aminotransferase mutant- t84v (see paper)
23% identity, 95% coverage: 19:395/398 of query aligns to 20:399/402 of 5wmiA
Sites not aligning to the query:
5wmhA Arabidopsis thaliana prephenate aminotransferase (see paper)
25% identity, 78% coverage: 85:395/398 of query aligns to 89:399/399 of 5wmhA
2o0rA The three-dimensional structure of n-succinyldiaminopimelate aminotransferase from mycobacterium tuberculosis (see paper)
29% identity, 58% coverage: 80:309/398 of query aligns to 81:310/385 of 2o0rA
Sites not aligning to the query:
5wmlA Arabidopsis thaliana prephenate aminotransferase mutant- k306a (see paper)
24% identity, 78% coverage: 85:395/398 of query aligns to 90:400/404 of 5wmlA
Sites not aligning to the query:
>WP_024851555.1 NCBI__GCF_000526715.1:WP_024851555.1
MADFNRVFPREGSDAEKYELRKTLFGRDDVLPMWVADMDLPTPDFIMQAIKTRLEHPILG
YTHMSDSVYKCIIDWQAYHDYEVKPEHILFTHNVANGFFMAVQAFTKPKEAVLVMPPVYP
PFLTAPEINDRKLVTAPLVLEAGRYEIDFEALQKKIVENKVKLILFCHPHNPSGRVWQQD
ELEKLAKICIEHQVVIVSDEIHSDMVFVGRHIPLASLSDEIKQLTITLSSPGKIFNLGGL
QIGYAIIANAKLKAAYLKVAQSVSIKELNLFAAVAIKIAYSEKGRRYVQELNQFLQQNID
KTEAFFQTHFPQVKVMRPEASYLVWLDFSTMCTKHETLKDWVVNEAKLGLNDGESFDVKS
NRPNAGSCFMRMNLAVPPRVLQQAFSHFKMGLKSLPKD
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory