SitesBLAST
Comparing WP_024851784.1 NCBI__GCF_000526715.1:WP_024851784.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
3oetH D-erythronate-4-phosphate dehydrogenase complexed with NAD
40% identity, 99% coverage: 3:372/374 of query aligns to 4:375/378 of 3oetH
- active site: N93 (= N92), R210 (= R208), D234 (= D228), E237 (= E231), E239 (= E233), G253 (≠ A247), H256 (= H250)
- binding nicotinamide-adenine-dinucleotide: N93 (= N92), V97 (= V96), G125 (= G124), G127 (= G126), N128 (= N127), V129 (= V128), D148 (= D147), P149 (= P148), P150 (= P149), H176 (= H174), T177 (= T175), P178 (= P176), Y185 (≠ H183), T187 (≠ S185), A208 (= A206), C209 (≠ A207), H256 (= H250), A258 (= A252)
5dt9A Crystal structure of a putative d-erythronate-4-phosphate dehydrogenase from vibrio cholerae
37% identity, 99% coverage: 3:371/374 of query aligns to 5:376/379 of 5dt9A
- active site: N95 (= N92), R212 (= R208), D236 (= D228), E241 (= E233), H258 (= H250)
- binding nicotinamide-adenine-dinucleotide: N95 (= N92), G129 (= G126), Q130 (≠ N127), V131 (= V128), D150 (= D147), K153 (≠ R150), H178 (= H174), T179 (= T175), P180 (= P176), W187 (≠ H183), T189 (≠ S185), A210 (= A206), A211 (= A207), H258 (= H250), A260 (= A252), G261 (= G253)
2o4cA Crystal structure of d-erythronate-4-phosphate dehydrogenase complexed with NAD (see paper)
36% identity, 99% coverage: 3:372/374 of query aligns to 2:380/380 of 2o4cA
- active site: N91 (= N92), R208 (= R208), D232 (= D228), E237 (= E233), H254 (= H250)
- binding nicotinamide-adenine-dinucleotide: N91 (= N92), V95 (= V96), G123 (= G124), G125 (= G126), Q126 (≠ N127), V127 (= V128), D146 (= D147), P147 (= P148), P148 (= P149), H174 (= H174), T175 (= T175), P176 (= P176), H183 (= H183), T185 (≠ S185), A206 (= A206), S207 (≠ A207), H254 (= H250), A256 (= A252), G257 (= G253)
- binding phosphate ion: T66 (≠ V67), R346 (= R338)
Q9I3W9 Erythronate-4-phosphate dehydrogenase; EC 1.1.1.290 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see paper)
36% identity, 99% coverage: 3:372/374 of query aligns to 2:380/380 of Q9I3W9
- C65 (≠ T66) modified: Disulfide link with 90
- C90 (= C91) modified: Disulfide link with 65
- QV 126:127 (≠ NV 127:128) binding NAD(+)
- D146 (= D147) binding NAD(+)
- T175 (= T175) binding NAD(+)
- ASR 206:208 (≠ AAR 206:208) binding NAD(+)
- D232 (= D228) binding NAD(+)
- G257 (= G253) binding NAD(+)
1wwkA Crystal structure of phosphoglycerate dehydrogenase from pyrococcus horikoshii ot3
28% identity, 66% coverage: 27:272/374 of query aligns to 30:300/304 of 1wwkA
- active site: S96 (≠ N92), R230 (= R208), D254 (= D228), E259 (= E233), H278 (= H250)
- binding nicotinamide-adenine-dinucleotide: V100 (= V96), G146 (vs. gap), F147 (vs. gap), G148 (vs. gap), R149 (vs. gap), I150 (vs. gap), Y168 (≠ N146), D169 (= D147), P170 (= P148), V201 (≠ T175), P202 (= P176), T207 (≠ S185), T228 (≠ A206), S229 (≠ A207), D254 (= D228), H278 (= H250), G280 (≠ A252)
5aovA Ternary crystal structure of pyrococcus furiosus glyoxylate hydroxypyruvate reductase in presence of glyoxylate (see paper)
25% identity, 62% coverage: 34:266/374 of query aligns to 41:304/334 of 5aovA
- active site: L100 (≠ N92), R241 (= R208), D265 (= D228), E270 (= E233), H288 (= H250)
- binding glyoxylic acid: M52 (≠ R45), L53 (≠ S46), L53 (≠ S46), Y74 (≠ T66), A75 (≠ V67), V76 (= V68), G77 (= G69), R241 (= R208), H288 (= H250)
- binding nadp nicotinamide-adenine-dinucleotide phosphate: V76 (= V68), T104 (≠ V96), F158 (≠ V125), G159 (= G126), R160 (≠ N127), I161 (≠ V128), S180 (≠ D147), R181 (≠ P148), A211 (≠ H174), V212 (≠ T175), P213 (= P176), T218 (≠ G181), I239 (≠ A206), A240 (= A207), R241 (= R208), H288 (= H250), G290 (≠ A252)
3dc2A Crystal structure of serine bound d-3-phosphoglycerate dehydrogenase from mycobacterium tuberculosis (see paper)
27% identity, 65% coverage: 27:268/374 of query aligns to 30:295/526 of 3dc2A
Sites not aligning to the query:
3ddnB Crystal structure of hydroxypyruvic acid phosphate bound d-3- phosphoglycerate dehydrogenase in mycobacterium tuberculosis (see paper)
27% identity, 65% coverage: 27:268/374 of query aligns to 31:296/525 of 3ddnB
4njoA Crystal structure of cofactor(NAD+) bound 3-phosphoglycerate dehydrogenase in entamoeba histolytica (see paper)
27% identity, 73% coverage: 3:274/374 of query aligns to 4:289/302 of 4njoA
- active site: N104 (= N92), R219 (= R208), D243 (= D228), S248 (≠ E233), K265 (≠ H250)
- binding nicotinamide-adenine-dinucleotide: A80 (≠ V68), V108 (= V96), G143 (= G126), Y144 (≠ N127), V145 (= V128), D164 (= D147), F166 (≠ P149), H189 (= H174), L190 (≠ T175), P191 (= P176), T217 (≠ A206), A218 (= A207), R219 (= R208), K265 (≠ H250), G267 (≠ A252)
4njmA Crystal structure of phosphoglycerate bound 3-phosphoglycerate dehydrogenase in entamoeba histolytica (see paper)
27% identity, 73% coverage: 3:274/374 of query aligns to 4:289/303 of 4njmA
- active site: N104 (= N92), R219 (= R208), D243 (= D228), S248 (≠ E233), K265 (≠ H250)
- binding 3-phosphoglyceric acid: K11 (≠ V10), R57 (= R45), S58 (= S46), R77 (≠ S65), G79 (≠ V67), A80 (≠ V68), N104 (= N92), R219 (= R208), K265 (≠ H250), A268 (≠ G253)
6biiA Crystal structure of pyrococcus yayanosii glyoxylate hydroxypyruvate reductase in complex with NADP and malonate (re-refinement of 5aow) (see paper)
23% identity, 71% coverage: 29:292/374 of query aligns to 35:330/332 of 6biiA
- active site: L99 (≠ N92), R240 (= R208), D264 (= D228), E269 (= E233), H287 (= H250)
- binding nadp nicotinamide-adenine-dinucleotide phosphate: V75 (= V68), T103 (≠ V96), G156 (= G124), F157 (≠ V125), G158 (= G126), R159 (≠ N127), I160 (≠ V128), A179 (vs. gap), R180 (vs. gap), S181 (≠ N146), K183 (≠ P148), V211 (≠ T175), P212 (= P176), E216 (= E180), T217 (≠ S185), V238 (≠ A206), A239 (= A207), R240 (= R208), D264 (= D228), H287 (= H250), G289 (≠ A252)
8pioA Crystal structure of ser33 in complex with php (3- phosphohydroxypyruvate)
26% identity, 65% coverage: 34:276/374 of query aligns to 70:347/443 of 8pioA
- binding 2-oxo-3-(phosphonooxy)propanoic acid: R81 (= R45), S82 (= S46)
- binding nicotinamide-adenine-dinucleotide: F127 (≠ G90), V133 (= V96), G181 (= G126), H182 (≠ N127), I183 (≠ V128), D202 (= D147), I203 (≠ P148), H231 (= H174), V232 (≠ T175), P233 (= P176), T238 (≠ S185), A259 (= A206), S260 (≠ A207), R261 (= R208), H321 (= H250), G323 (≠ A252)
P87228 Putative D-3-phosphoglycerate dehydrogenase; 3-PGDH; 2-oxoglutarate reductase; EC 1.1.1.95; EC 1.1.1.399 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
25% identity, 65% coverage: 34:276/374 of query aligns to 93:370/466 of P87228
- S258 (≠ T178) modified: Phosphoserine
Sites not aligning to the query:
- 87 modified: Phosphoserine
8q2iB Crystal structure of ser33 in complex 2hg (2-hydroxyglutarate) and serine
26% identity, 65% coverage: 34:276/374 of query aligns to 74:351/447 of 8q2iB
- binding nicotinamide-adenine-dinucleotide: V137 (= V96), G185 (= G126), H186 (≠ N127), I187 (≠ V128), Y205 (≠ N146), D206 (= D147), I207 (≠ P148), H235 (= H174), V236 (≠ T175), P237 (= P176), A263 (= A206), R265 (= R208), H325 (= H250)
Sites not aligning to the query:
8pinC Crystal structure of ser33
26% identity, 65% coverage: 34:276/374 of query aligns to 46:323/419 of 8pinC
- binding nicotinamide-adenine-dinucleotide: F103 (≠ G90), N105 (= N92), V109 (= V96), G155 (= G124), G157 (= G126), H158 (≠ N127), I159 (≠ V128), D178 (= D147), I179 (≠ P148), H207 (= H174), V208 (≠ T175), P209 (= P176), T214 (≠ S185), M217 (≠ L188), A235 (= A206), R237 (= R208), G299 (≠ A252)
- binding : W144 (≠ F113), D228 (≠ P199), G229 (≠ S200)
8q2iA Crystal structure of ser33 in complex 2hg (2-hydroxyglutarate) and serine
26% identity, 65% coverage: 34:276/374 of query aligns to 50:327/419 of 8q2iA
- binding (2R)-2-hydroxypentanedioic acid: S62 (= S46), C84 (≠ V67), I85 (≠ V68)
- binding nicotinamide-adenine-dinucleotide: V113 (= V96), G161 (= G126), H162 (≠ N127), I163 (≠ V128), Y181 (≠ N146), D182 (= D147), I183 (≠ P148), H211 (= H174), V212 (≠ T175), P213 (= P176), T218 (≠ S185), A239 (= A206), R241 (= R208), H301 (= H250)
Sites not aligning to the query:
2p9eA Crystal structure of g336v mutant of e.Coli phosphoglycerate dehydrogenase (see paper)
28% identity, 60% coverage: 34:259/374 of query aligns to 45:297/406 of 2p9eA
- active site: N104 (= N92), R236 (= R208), D260 (= D228), E265 (= E233), H288 (= H250)
- binding 1,4-dihydronicotinamide adenine dinucleotide: G156 (= G126), H157 (≠ N127), I158 (≠ V128), Y176 (vs. gap), D177 (vs. gap), I178 (vs. gap), H206 (= H174), V207 (≠ T175), P208 (= P176), S212 (= S185), A234 (= A206), S235 (≠ A207), R236 (= R208), H288 (= H250), G290 (≠ A252)
6rj5A Crystal structure of phgdh in complex with compound 39 (see paper)
24% identity, 69% coverage: 1:259/374 of query aligns to 1:287/301 of 6rj5A
1ybaA The active form of phosphoglycerate dehydrogenase (see paper)
27% identity, 60% coverage: 34:259/374 of query aligns to 45:297/406 of 1ybaA
- active site: N104 (= N92), R236 (= R208), D260 (= D228), E265 (= E233), H288 (= H250)
- binding 2-oxoglutaric acid: R56 (= R45), S57 (= S46), C79 (≠ V67), I80 (≠ V68)
- binding nicotinamide-adenine-dinucleotide: I80 (≠ V68), F102 (≠ G90), V108 (= V96), G154 (= G124), G156 (= G126), H157 (≠ N127), I158 (≠ V128), Y176 (vs. gap), D177 (vs. gap), I178 (vs. gap), K181 (≠ D147), H206 (= H174), V207 (≠ T175), P208 (= P176), A234 (= A206), S235 (≠ A207), R236 (= R208), H288 (= H250), G290 (≠ A252)
- binding phosphate ion: G81 (= G69), N83 (≠ D71)
7ewhA Crystal structure of human phgdh in complex with homoharringtonine (see paper)
24% identity, 69% coverage: 1:259/374 of query aligns to 1:287/302 of 7ewhA
- binding (3beta)-O~3~-[(2R)-2,6-dihydroxy-2-(2-methoxy-2-oxoethyl)-6-methylheptanoyl]cephalotaxine: L146 (≠ I123), G147 (= G124), L148 (≠ V125), G149 (= G126), R150 (≠ N127), I151 (≠ V128), G152 (= G129), D170 (= D147), H201 (= H174), T202 (= T175), P203 (= P176)
Query Sequence
>WP_024851784.1 NCBI__GCF_000526715.1:WP_024851784.1
MKKIVIDDAVPYAQEMFSHLGEITLIPGRDINAETVKDADALIVRSRTQVNESLLNGSTV
SFVGSTVVGLDHIDQHYLADQHIHFYSAQGCNANSVSEYVISCLLYLAEEKGFQLKDKSI
GIIGVGNVGKLLEQKARGLGMTVLLNDPPRQEREGLPHFVNLQTALSADIVSFHTPLTTE
GAHPSYQLLNSTNFHLVTPSTILINAARGGIIDETIWTQTPTLSNIIDCWENEPNINESL
YQAADIATPHIAGHALEAKIKGSSMVYEVLCQHWNETPQNHWQEKVPHPKTPLITDLEKP
FQTTLFNIVRQCYDPLTDDYAIRSTRINEVYKKFEYYRRHYPTHHEWTQFDVKSGRLAAE
NSCIKALGFNVLDI
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SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory