SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_025163874.1 NCBI__GCF_000498575.2:WP_025163874.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found no hits to proteins with known functional sites (download)

Query Sequence

>WP_025163874.1 NCBI__GCF_000498575.2:WP_025163874.1
MSQTMLSILAFVPLVLAGVLLIGFRWPAKYAMPVVFLLTAIIGLTAWDMTLNRVIASSLQ
GLILTAAILWIIFGAILLLNTLKHSGGISAIRRGFSSISPDRRVQALIVAWLFGCFIEGA
SGFGTPAAVAAPLLVALGFPALAAVILGMMVQSTPVSFGAVGTPMLVGVAGGLDQSGMSA
QLLALNSSWDIFFQLIYSRVAITHGLIGILMPLIMLMIMTRFFGKNQSWKEGLMVAPFAI
FTGLAFVLPYMAAGVFLGPEFPSMIGAMVGLAIVIPAAKAGFLLPKETWDFADAKDWPAE
WMGKLELKIEDIAGKTPISVRMAWAPYLLLAVFLVASRIFPELKAALMAVSFGWTDILGE
TGVSGTLQPLYLPGGILCMVVLVTCFLHRMRLAELGAAVSESSRTLLGAGFVLIFTIPMV
RILINSGVNASDLMSMPVAMAKLVADSVGGIYPLFAPAVGGLGAFIAGSNTVSNLMLSQF
QFNTAGLLGVSGAMMVAAQSVGAAAGNMIAIHNVVAASATVGLLGREGITLRKTMLPTLY
YLLAAGALTMIAMYGMAITDPLQVVR

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory