Comparing WP_025272081.1 NCBI__GCF_000527155.1:WP_025272081.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P04983 Ribose import ATP-binding protein RbsA; EC 7.5.2.7 from Escherichia coli (strain K12) (see paper)
36% identity, 94% coverage: 3:489/520 of query aligns to 5:486/501 of P04983
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
33% identity, 43% coverage: 3:227/520 of query aligns to 3:225/241 of 4u00A
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
30% identity, 41% coverage: 10:224/520 of query aligns to 9:222/240 of 4ymuJ
8k1oB Mycobacterial efflux pump, amppnp bound state
34% identity, 42% coverage: 3:221/520 of query aligns to 6:214/215 of 8k1oB
8k1pB Mycobacterial efflux pump, adp+vanadate bound state
34% identity, 42% coverage: 3:221/520 of query aligns to 4:212/213 of 8k1pB
3c4jA Abc protein artp in complex with atp-gamma-s
31% identity, 42% coverage: 8:224/520 of query aligns to 9:224/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
31% identity, 42% coverage: 8:224/520 of query aligns to 9:224/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
31% identity, 42% coverage: 8:224/520 of query aligns to 9:224/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
31% identity, 42% coverage: 8:224/520 of query aligns to 9:224/242 of 2oljA
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
29% identity, 48% coverage: 3:249/520 of query aligns to 2:261/343 of P30750
Sites not aligning to the query:
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
28% identity, 48% coverage: 3:249/520 of query aligns to 3:262/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
28% identity, 48% coverage: 3:249/520 of query aligns to 3:262/344 of 3tuiC
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
28% identity, 48% coverage: 3:249/520 of query aligns to 3:262/344 of 6cvlD
7ahhC Opua inhibited inward-facing, sbd docked (see paper)
30% identity, 44% coverage: 8:238/520 of query aligns to 32:263/382 of 7ahhC
Sites not aligning to the query:
7aheC Opua inhibited inward facing (see paper)
30% identity, 44% coverage: 8:238/520 of query aligns to 32:263/382 of 7aheC
Sites not aligning to the query:
6mjpA Lptb(e163q)fgc from vibrio cholerae (see paper)
29% identity, 43% coverage: 3:225/520 of query aligns to 3:223/240 of 6mjpA
7ahdC Opua (e190q) occluded (see paper)
29% identity, 44% coverage: 8:234/520 of query aligns to 32:259/260 of 7ahdC
Sites not aligning to the query:
4yerA Crystal structure of an abc transporter atp-binding protein (tm_1403) from thermotoga maritima msb8 at 2.35 a resolution
32% identity, 45% coverage: 5:238/520 of query aligns to 7:231/285 of 4yerA
3d31A Modbc from methanosarcina acetivorans (see paper)
27% identity, 59% coverage: 3:308/520 of query aligns to 2:275/348 of 3d31A
Sites not aligning to the query:
5x40A Structure of a cbio dimer bound with amppcp (see paper)
34% identity, 43% coverage: 3:223/520 of query aligns to 5:225/280 of 5x40A
>WP_025272081.1 NCBI__GCF_000527155.1:WP_025272081.1
MRLELKGLTKKFGSFTADDDIDLVVEPGQIHAVLGENGAGKSTLMNMLYGILEPTSGEIL
IDDSPVSFSTPGDAIDSGIGMVHQHFKLVGPFSVADNVQLGREHSHAGVLDRKQARQAVL
EVSERYGLKLDPDAVVADLPVGVQQRVEIVKALSGHTELLILDEPTAVLTPAEVTELLDI
MRGLAESGMSIIFISHKLKEVKAVADTITVIRRGKVVAEASPEDTETELASAMVGRSVSL
KVDKTPAEPGEVALELEDLTVIDDRGIAALDGLNLNVRAGEIVGLAGVEGNGQTELARSV
LGTVKSDSGSIHLNGDDVTRWSPVQRIDSGLGYIPEDRARDGLVSDFTVAENIALNQYRN
SPLSHLGVVNFKAMHELAENSIEEFDIRTQGSDERVSSLSGGNQQKVIIARELSRPRRVL
VAAQPTRGVDVGAIEFIHQRLVQERDNDTAILLISAELDEILSLADRVAVIYDGKIVGEV
SPDTPRQEIGQLMIGARPDSTVTDESTASDDDTQGGDREQ
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory