Comparing WP_025272421.1 NCBI__GCF_000527155.1:WP_025272421.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P04983 Ribose import ATP-binding protein RbsA; EC 7.5.2.7 from Escherichia coli (strain K12) (see paper)
38% identity, 99% coverage: 1:499/503 of query aligns to 1:493/501 of P04983
3c4jA Abc protein artp in complex with atp-gamma-s
30% identity, 47% coverage: 4:239/503 of query aligns to 3:240/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
30% identity, 47% coverage: 4:239/503 of query aligns to 3:240/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
30% identity, 47% coverage: 4:239/503 of query aligns to 3:240/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
30% identity, 47% coverage: 4:239/503 of query aligns to 3:240/242 of 2oljA
P69874 Spermidine/putrescine import ATP-binding protein PotA; EC 7.6.2.11 from Escherichia coli (strain K12) (see 3 papers)
31% identity, 43% coverage: 1:218/503 of query aligns to 14:226/378 of P69874
Sites not aligning to the query:
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
31% identity, 45% coverage: 4:227/503 of query aligns to 2:223/241 of 4u00A
8wm7D Cryo-em structure of cyanobacterial nitrate/nitrite transporter nrtbcd in complex with signalling protein pii (see paper)
32% identity, 42% coverage: 7:216/503 of query aligns to 7:214/257 of 8wm7D
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
28% identity, 43% coverage: 4:221/503 of query aligns to 4:231/254 of 1g6hA
8k1oB Mycobacterial efflux pump, amppnp bound state
33% identity, 43% coverage: 5:219/503 of query aligns to 6:210/215 of 8k1oB
8k1pB Mycobacterial efflux pump, adp+vanadate bound state
33% identity, 43% coverage: 5:219/503 of query aligns to 4:208/213 of 8k1pB
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
29% identity, 45% coverage: 4:230/503 of query aligns to 1:225/240 of 4ymuJ
8w9mD Cryo-em structure of the cyanobacterial nitrate transporter nrtbcd in complex with atp (see paper)
31% identity, 42% coverage: 7:216/503 of query aligns to 5:212/256 of 8w9mD
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
28% identity, 43% coverage: 4:221/503 of query aligns to 4:231/253 of 1g9xB
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
30% identity, 45% coverage: 4:230/503 of query aligns to 1:231/343 of P30750
Sites not aligning to the query:
4yerA Crystal structure of an abc transporter atp-binding protein (tm_1403) from thermotoga maritima msb8 at 2.35 a resolution
28% identity, 48% coverage: 1:241/503 of query aligns to 1:231/285 of 4yerA
P07821 Iron(3+)-hydroxamate import ATP-binding protein FhuC; Ferric hydroxamate uptake protein C; Ferrichrome transport ATP-binding protein FhuC; Iron(III)-hydroxamate import ATP-binding protein FhuC; EC 7.2.2.16 from Escherichia coli (strain K12) (see 2 papers)
30% identity, 47% coverage: 3:238/503 of query aligns to 10:246/265 of P07821
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
30% identity, 45% coverage: 4:230/503 of query aligns to 2:232/344 of 6cvlD
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
30% identity, 45% coverage: 4:230/503 of query aligns to 2:232/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
30% identity, 45% coverage: 4:230/503 of query aligns to 2:232/344 of 3tuiC
>WP_025272421.1 NCBI__GCF_000527155.1:WP_025272421.1
MSTVIQMRGIRKSFPGVDALKGVDLTLRKGEIHAVMGENGAGKSTLIKTLTGVHRHDAGK
ILLHDKPVTFKSPGEAQNAGIATVYQEVNLTDNLSVAENLFAGREKRFGPFINFRDMRRQ
ARQVLRDLGLDLDVTAPLSHYSLAMQQLVAIARAVTMEAQVLVLDEPTSSLDKDEVKLLL
KVMRALADQGVSLVFISHFLDQVYDVCDRMTVLRGGELIGEWGTSELSQYELIEHMLGRE
VSDLASLSVEGRNDEVGPEAVVAADNLGRTGSIEPFDLEVKKGEIVGLAGLLGAGRTEAA
RLITGADHADNGQLSVHGKKQNGYGPRDAIAQGVAYCSEDRKGEGLIPDLTVAENIVIAL
QAARGWVRRIPAAERDRVVRNYIEKLDIRPSDPDMPVRNLSGGNQQKVILARWLLMDPRL
LVLDEPTRGIDVGAKADIQRLVTELSADGMGVVFISAELEEVVRLSHRIAVLKDHKMIDT
FRNTADTTTDDIVDTIAAGGRPC
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory