Comparing WP_025272422.1 NCBI__GCF_000527155.1:WP_025272422.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
6hbdA Crystal structure of msmeg_1712 from mycobacterium smegmatis in complex with beta-d-galactofuranose (see paper)
46% identity, 91% coverage: 31:324/324 of query aligns to 3:292/305 of 6hbdA
Sites not aligning to the query:
6hyhA Crystal structure of msmeg_1712 from mycobacterium smegmatis in complex with beta-d-fucofuranose (see paper)
46% identity, 91% coverage: 30:324/324 of query aligns to 1:291/304 of 6hyhA
Sites not aligning to the query:
6hbmA Crystal structure of msmeg_1712 from mycobacterium smegmatis in complex with alpha-l-arabinofuranose (see paper)
46% identity, 91% coverage: 30:324/324 of query aligns to 1:291/304 of 6hbmA
Sites not aligning to the query:
5ocpA The periplasmic binding protein component of the arabinose abc transporter from shewanella sp. Ana-3 bound to alpha and beta-l- arabinofuranose
43% identity, 90% coverage: 32:322/324 of query aligns to 2:288/302 of 5ocpA
2vk2A Crystal structure of a galactofuranose binding protein (see paper)
40% identity, 90% coverage: 31:322/324 of query aligns to 2:291/296 of 2vk2A
P39325 Galactofuranose-binding protein YtfQ from Escherichia coli (strain K12) (see 2 papers)
40% identity, 90% coverage: 31:322/324 of query aligns to 24:313/318 of P39325
Sites not aligning to the query:
2ioyA Crystal structure of thermoanaerobacter tengcongensis ribose binding protein (see paper)
32% identity, 76% coverage: 69:314/324 of query aligns to 37:272/274 of 2ioyA
Sites not aligning to the query:
4zjpA Structure of an abc-transporter solute binding protein (sbp_ipr025997) from actinobacillus succinogenes (asuc_0197, target efi-511067) with bound beta-d-ribopyranose
30% identity, 77% coverage: 64:312/324 of query aligns to 34:270/270 of 4zjpA
Sites not aligning to the query:
7e7mC Crystal structure analysis of the streptococcus agalactiae ribose binding protein rbsb
26% identity, 81% coverage: 54:314/324 of query aligns to 31:278/284 of 7e7mC
Sites not aligning to the query:
1dbpA Identical mutations at corresponding positions in two homologous proteins with non-identical effects (see paper)
29% identity, 77% coverage: 51:299/324 of query aligns to 18:257/271 of 1dbpA
Sites not aligning to the query:
4yo7A Crystal structure of an abc transporter solute binding protein (ipr025997) from bacillus halodurans c-125 (bh2323, target efi- 511484) with bound myo-inositol
32% identity, 66% coverage: 64:276/324 of query aligns to 38:241/287 of 4yo7A
Sites not aligning to the query:
2fn8A Thermotoga maritima ribose binding protein ribose bound form (see paper)
29% identity, 74% coverage: 64:304/324 of query aligns to 33:288/292 of 2fn8A
Sites not aligning to the query:
2x7xA Fructose binding periplasmic domain of hybrid two component system bt1754 (see paper)
26% identity, 85% coverage: 33:309/324 of query aligns to 4:270/301 of 2x7xA
4rxmB Crystal structure of periplasmic abc transporter solute binding protein a7jw62 from mannheimia haemolytica phl213, target efi-511105, in complex with myo-inositol
26% identity, 68% coverage: 64:283/324 of query aligns to 34:246/288 of 4rxmB
Sites not aligning to the query:
4rxmA Crystal structure of periplasmic abc transporter solute binding protein a7jw62 from mannheimia haemolytica phl213, target efi-511105, in complex with myo-inositol
26% identity, 68% coverage: 64:283/324 of query aligns to 36:248/291 of 4rxmA
Sites not aligning to the query:
A0QYB5 D-threitol-binding protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) (Mycobacterium smegmatis) (see paper)
28% identity, 80% coverage: 9:266/324 of query aligns to 10:257/349 of A0QYB5
Sites not aligning to the query:
8fxuA Thermoanaerobacter thermosaccharolyticum periplasmic glucose-binding protein glucose complex: badan conjugate attached at f17c (see paper)
27% identity, 65% coverage: 63:272/324 of query aligns to 33:251/310 of 8fxuA
Sites not aligning to the query:
4rsmA Crystal structure of carbohydrate transporter msmeg_3599 from mycobacterium smegmatis str. Mc2 155, target efi-510970, in complex with d-threitol (see paper)
26% identity, 69% coverage: 42:266/324 of query aligns to 13:225/315 of 4rsmA
Sites not aligning to the query:
A0QYB3 Xylitol-binding protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) (Mycobacterium smegmatis) (see paper)
27% identity, 77% coverage: 19:266/324 of query aligns to 21:257/349 of A0QYB3
Sites not aligning to the query:
4irxA Crystal structure of caulobacter myo-inositol binding protein bound to myo-inositol (see paper)
22% identity, 68% coverage: 64:282/324 of query aligns to 40:253/296 of 4irxA
Sites not aligning to the query:
>WP_025272422.1 NCBI__GCF_000527155.1:WP_025272422.1
MKQRLLGGLGSAMLLFGSVACGDGGDNGDGLTIGFVQVGAESAWRTANSESVKDAAADDD
RIAELKFVDGQQKQEKQLKGVRNLITQGVDAIVVAPIVETGWTDVLQEAQDNDIPVILAD
RGIEKEDSDLYVTRLGSDFVREGEKAGEWVLDEFADANGLNLLQLEGSVGSAPANDRAEG
FFNVLDGEGFDYQLVDSQSGDFQAEDGKAVMETFLQKYDADEIDLLYAHNDEMGLGAIQA
MEEAGVAPGDDIQVIIVDGSQAGFQAGVEGKLNYIVECNPAFGPQLMDVVTDVVNGEEMD
KFTAVEEGVFSEDDFADEVDNRAF
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory