SitesBLAST
Comparing WP_027179346.1 NCBI__GCF_000429985.1:WP_027179346.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
6ie0B X-ray crystal structure of 2r,3r-butanediol dehydrogenase from bacillus subtilis
42% identity, 99% coverage: 4:356/358 of query aligns to 1:346/347 of 6ie0B
1e3jA Ketose reductase (sorbitol dehydrogenase) from silverleaf whitefly (see paper)
33% identity, 97% coverage: 7:354/358 of query aligns to 4:344/348 of 1e3jA
- active site: C38 (= C42), G39 (= G43), S40 (= S44), H43 (= H47), H63 (= H75), E64 (= E76), C93 (= C105), C96 (= C108), C99 (= C111), C107 (= C119), T111 (≠ A123), P150 (= P161), G154 (= G165), K341 (= K351)
- binding phosphate ion: A174 (= A185), A196 (≠ E208), R197 (≠ M209), S198 (= S210), R201 (= R213)
- binding zinc ion: C38 (= C42), H63 (= H75), E64 (= E76), C93 (= C105), C96 (= C108), C99 (= C111), C107 (= C119)
5vm2A Crystal structure of eck1772, an oxidoreductase/dehydrogenase of unknown specificity involved in membrane biogenesis from escherichia coli
34% identity, 92% coverage: 25:355/358 of query aligns to 22:344/347 of 5vm2A
- active site: C39 (= C42), G40 (= G43), S41 (= S44), H44 (= H47), H65 (= H75), E66 (= E76), C95 (= C105), C98 (= C108), C101 (= C111), C109 (= C119), D113 (≠ A123), P153 (= P161), G157 (= G165), K340 (= K351)
- binding magnesium ion: H65 (= H75), E66 (= E76), E152 (= E160)
- binding zinc ion: C95 (= C105), C98 (= C108), C101 (= C111), C109 (= C119)
O58389 L-threonine 3-dehydrogenase; L-ThrDH; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) (see 2 papers)
35% identity, 95% coverage: 1:339/358 of query aligns to 5:332/348 of O58389
- C42 (= C42) binding Zn(2+)
- T44 (≠ S44) mutation to A: Total loss of enzymatic activity.
- H67 (= H75) binding Zn(2+)
- E68 (= E76) binding Zn(2+)
- C97 (= C105) binding Zn(2+)
- C100 (= C108) binding Zn(2+)
- C103 (= C111) binding Zn(2+)
- C111 (= C119) binding Zn(2+)
- E152 (= E160) mutation E->A,Q: Almost complete loss of enzymatic activity.; mutation to C: 120-fold decrease in catalytic efficiency.; mutation to D: Shows 3-fold higher turnover rate and reduced affinities toward L-threonine and NAD(+), compared to wild-type.; mutation to K: Total loss of enzymatic activity.
- L179 (≠ I188) binding NAD(+)
- E199 (= E208) binding NAD(+); mutation to A: Large decrease in affinity for NAD(+).
- R204 (= R213) binding NAD(+); mutation to A: Large decrease in affinity for NAD(+).
- LGL 266:268 (≠ VGI 275:277) binding NAD(+)
- IT 291:292 (≠ -T 299) binding NAD(+)
- R294 (≠ A301) mutation to A: 4000-fold decrease in catalytic efficiency.
2dfvA Hyperthermophilic threonine dehydrogenase from pyrococcus horikoshii (see paper)
35% identity, 95% coverage: 1:339/358 of query aligns to 3:330/346 of 2dfvA
- active site: C40 (= C42), G41 (= G43), T42 (≠ S44), H45 (= H47), H65 (= H75), E66 (= E76), C95 (= C105), C98 (= C108), C101 (= C111), C109 (= C119), K113 (≠ A123), P151 (= P161), A155 (≠ G165)
- binding nicotinamide-adenine-dinucleotide: G175 (= G186), P176 (≠ T187), L177 (≠ I188), E197 (= E208), P198 (≠ M209), R202 (= R213), F241 (≠ C252), S242 (≠ V253), A244 (≠ N255), L264 (≠ V275), G265 (= G276), L266 (≠ I277), I289 (vs. gap), T290 (= T299)
- binding zinc ion: C95 (= C105), C101 (= C111), C109 (= C119)
Sites not aligning to the query:
3qe3A Sheep liver sorbitol dehydrogenase (see paper)
34% identity, 92% coverage: 9:336/358 of query aligns to 7:327/351 of 3qe3A
- active site: C39 (= C42), G40 (= G43), S41 (= S44), H44 (= H47), H64 (= H75), E65 (= E76), R94 (≠ Q103), D97 (≠ G106), C100 (= C111), S108 (≠ C119), F112 (≠ A123), P151 (= P161), G155 (= G165)
- binding glycerol: Y45 (≠ E48), F54 (= F55), T116 (≠ L127), R293 (≠ A301)
- binding zinc ion: C39 (= C42), H64 (= H75), E65 (= E76)
Sites not aligning to the query:
P07846 Sorbitol dehydrogenase; SDH; L-iditol 2-dehydrogenase; Polyol dehydrogenase; Xylitol dehydrogenase; XDH; EC 1.1.1.-; EC 1.1.1.14; EC 1.1.1.9 from Ovis aries (Sheep) (see paper)
35% identity, 92% coverage: 9:336/358 of query aligns to 11:330/354 of P07846
- C43 (= C42) binding Zn(2+)
- Y49 (= Y49) binding substrate
- H67 (= H75) binding Zn(2+)
- E68 (= E76) binding Zn(2+)
- E153 (= E160) binding substrate
- R296 (≠ A301) binding substrate
- Y297 (= Y302) binding substrate
Q5JI69 L-threonine 3-dehydrogenase; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Pyrococcus kodakaraensis (strain KOD1)) (see paper)
33% identity, 95% coverage: 1:339/358 of query aligns to 5:332/350 of Q5JI69
- L179 (≠ I188) binding NAD(+)
- E199 (= E208) binding NAD(+)
- R204 (= R213) binding NAD(+)
- LGL 266:268 (≠ VGI 275:277) binding NAD(+)
- IT 291:292 (≠ TD 292:293) binding NAD(+)
3gfbA L-threonine dehydrogenase (tktdh) from the hyperthermophilic archaeon thermococcus kodakaraensis (see paper)
33% identity, 95% coverage: 1:339/358 of query aligns to 3:330/347 of 3gfbA
- active site: C40 (= C42), G41 (= G43), T42 (≠ S44), H45 (= H47), H65 (= H75), E66 (= E76), C95 (= C105), C98 (= C108), C101 (= C111), C109 (= C119), K113 (≠ A123), P151 (= P161), A155 (≠ G165)
- binding nicotinamide-adenine-dinucleotide: G173 (= G184), G175 (= G186), P176 (≠ T187), L177 (≠ I188), S196 (≠ L207), E197 (= E208), P198 (≠ M209), R202 (= R213), F241 (≠ C252), S242 (≠ V253), A244 (≠ N255), L264 (≠ V275), G265 (= G276), L266 (≠ I277), I289 (≠ T292), T290 (≠ D293)
Sites not aligning to the query:
Q00796 Sorbitol dehydrogenase; SDH; (R,R)-butanediol dehydrogenase; L-iditol 2-dehydrogenase; Polyol dehydrogenase; Ribitol dehydrogenase; RDH; Xylitol dehydrogenase; XDH; EC 1.1.1.-; EC 1.1.1.4; EC 1.1.1.14; EC 1.1.1.56; EC 1.1.1.9 from Homo sapiens (Human) (see 10 papers)
33% identity, 92% coverage: 9:336/358 of query aligns to 13:333/357 of Q00796
- C45 (= C42) binding Zn(2+)
- H70 (= H75) binding Zn(2+)
- E71 (= E76) binding Zn(2+)
- R110 (= R115) to P: in HMNR8; results in protein aggregation
- H135 (≠ I139) to R: in HMNR8; results in protein aggregation
- A153 (= A157) to D: in HMNR8; uncertain significance; results in protein aggregation; dbSNP:rs145813597
- I184 (= I188) binding NAD(+)
- D204 (≠ E208) binding NAD(+)
- R209 (= R213) binding NAD(+)
- Q239 (≠ S244) to L: in dbSNP:rs1042079
- N269 (≠ R271) to T: in dbSNP:rs930337
- VGL 273:275 (≠ VGI 275:277) binding NAD(+)
- VFR 297:299 (≠ TLA 299:301) binding NAD(+)
- V322 (≠ I325) to I: in HMNR8; uncertain significance; dbSNP:rs149975952
Sites not aligning to the query:
- 1 modified: Initiator methionine, Removed
1pl6A Human sdh/nadh/inhibitor complex (see paper)
33% identity, 92% coverage: 9:336/358 of query aligns to 12:332/356 of 1pl6A
- active site: C44 (= C42), G45 (= G43), S46 (= S44), H49 (= H47), H69 (= H75), E70 (= E76), R99 (≠ Q103), D102 (≠ G106), C105 (= C111), S113 (≠ C119), F117 (≠ A123), P156 (= P161), G160 (= G165)
- binding 4-[2-(hydroxymethyl)pyrimidin-4-yl]-n,n-dimethylpiperazine-1-sulfonamide: C44 (= C42), S46 (= S44), I56 (= I54), F59 (= F55), H69 (= H75), E155 (= E160), L274 (≠ I277), F297 (≠ L300)
- binding nicotinamide-adenine-dinucleotide: G181 (= G186), P182 (≠ T187), I183 (= I188), D203 (≠ E208), L204 (≠ M209), R208 (= R213), C249 (= C252), T250 (≠ V253), V272 (= V275), G273 (= G276), L274 (≠ I277), F297 (≠ L300), R298 (≠ A301)
- binding zinc ion: C44 (= C42), H69 (= H75)
Sites not aligning to the query:
P27867 Sorbitol dehydrogenase; SDH; L-iditol 2-dehydrogenase; Polyol dehydrogenase; Xylitol dehydrogenase; XDH; EC 1.1.1.-; EC 1.1.1.14; EC 1.1.1.9 from Rattus norvegicus (Rat) (see paper)
33% identity, 92% coverage: 9:336/358 of query aligns to 13:333/357 of P27867
- C45 (= C42) binding Zn(2+)
- H70 (= H75) binding Zn(2+)
- E71 (= E76) binding Zn(2+)
- E156 (= E160) binding Zn(2+)
- D204 (≠ E208) binding NAD(+)
- R209 (= R213) binding NAD(+)
- VGM 273:275 (≠ VGI 275:277) binding NAD(+)
- VFR 297:299 (≠ TLA 299:301) binding NAD(+)
7y9pA Xylitol dehydrogenase s96c/s99c/y102c mutant(thermostabilized form) from pichia stipitis (see paper)
32% identity, 90% coverage: 15:336/358 of query aligns to 13:338/357 of 7y9pA
4ej6A Crystal structure of a putative zinc-binding dehydrogenase (target psi-012003) from sinorhizobium meliloti 1021
32% identity, 92% coverage: 5:333/358 of query aligns to 4:322/343 of 4ej6A
- active site: C40 (= C42), G41 (= G43), T42 (≠ S44), H45 (= H47), H61 (= H75), E62 (= E76), C91 (= C105), C94 (= C108), C97 (= C111), C105 (= C119), R109 (≠ A123), P147 (= P161), C151 (≠ G165)
- binding zinc ion: C91 (= C105), C94 (= C108), C97 (= C111), C105 (= C119)
Sites not aligning to the query:
4ejmA Crystal structure of a putative zinc-binding dehydrogenase (target psi-012003) from sinorhizobium meliloti 1021 bound to NADP
32% identity, 92% coverage: 5:333/358 of query aligns to 4:322/342 of 4ejmA
- active site: C40 (= C42), G41 (= G43), T42 (≠ S44), H45 (= H47), H61 (= H75), E62 (= E76), C91 (= C105), C94 (= C108), C97 (= C111), C105 (= C119), R109 (≠ A123), P147 (= P161), C151 (≠ G165)
- binding nadp nicotinamide-adenine-dinucleotide phosphate: G170 (= G184), G172 (= G186), V173 (≠ T187), I174 (= I188), T194 (≠ E208), R195 (≠ M209), Q196 (≠ S210), K199 (≠ R213), C240 (= C252), E245 (≠ F257), T246 (= T258), L263 (≠ V275), V265 (≠ I277), I291 (≠ A301)
- binding zinc ion: C91 (= C105), C94 (= C108), C97 (= C111), C105 (= C119)
Sites not aligning to the query:
2ejvA Crystal structure of threonine 3-dehydrogenase complexed with NAD+
32% identity, 93% coverage: 25:357/358 of query aligns to 21:342/343 of 2ejvA
- active site: C38 (= C42), G39 (= G43), T40 (≠ S44), H43 (= H47), H63 (= H75), E64 (= E76), C93 (= C105), C96 (= C108), C99 (= C111), C107 (= C119), Q111 (≠ A123), P149 (= P161), A153 (≠ G165), K336 (= K351)
- binding nicotinamide-adenine-dinucleotide: G172 (= G184), G174 (= G186), P175 (≠ T187), I176 (= I188), S195 (≠ L207), D196 (≠ E208), P197 (≠ M209), R201 (= R213), F238 (≠ C252), S239 (≠ V253), N241 (= N255), A244 (≠ T258), L261 (≠ V275), G262 (= G276), I263 (= I277)
- binding zinc ion: C38 (= C42), H63 (= H75), E64 (= E76), C96 (= C108), C99 (= C111), C107 (= C119)
2dq4A Crystal structure of threonine 3-dehydrogenase
32% identity, 93% coverage: 25:357/358 of query aligns to 21:342/343 of 2dq4A
- active site: C38 (= C42), G39 (= G43), T40 (≠ S44), H43 (= H47), H63 (= H75), E64 (= E76), C93 (= C105), C96 (= C108), C99 (= C111), C107 (= C119), Q111 (≠ A123), P149 (= P161), A153 (≠ G165), K336 (= K351)
- binding zinc ion: C38 (= C42), H63 (= H75), E64 (= E76), C93 (= C105), C96 (= C108), C107 (= C119)
Q5SKS4 L-threonine 3-dehydrogenase; TDH; EC 1.1.1.103 from Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
32% identity, 93% coverage: 25:357/358 of query aligns to 21:342/343 of Q5SKS4
- C38 (= C42) binding Zn(2+)
- H63 (= H75) binding Zn(2+)
- E64 (= E76) binding Zn(2+)
- C93 (= C105) binding Zn(2+)
- C96 (= C108) binding Zn(2+)
- C99 (= C111) binding Zn(2+)
- C107 (= C119) binding Zn(2+)
- I176 (= I188) binding NAD(+)
- D196 (≠ E208) binding NAD(+)
- R201 (= R213) binding NAD(+)
- LGI 261:263 (≠ VGI 275:277) binding NAD(+)
- IAG 286:288 (≠ IGT 297:299) binding NAD(+)
2eerB Structural study of project id st2577 from sulfolobus tokodaii strain7
33% identity, 90% coverage: 14:336/358 of query aligns to 11:329/347 of 2eerB
- active site: C38 (= C42), H39 (≠ G43), S40 (= S44), H43 (= H47), H68 (= H75), E69 (= E76), E98 (≠ C105), C101 (= C108), C104 (= C111), C112 (= C119), R116 (≠ A123), C154 (vs. gap), T158 (= T164)
- binding nicotinamide-adenine-dinucleotide: C38 (= C42), H39 (≠ G43), S40 (= S44), H43 (= H47), C154 (vs. gap), T158 (= T164), G178 (= G184), G181 (≠ T187), G182 (= G189), L183 (= L190), D203 (≠ E208), V204 (≠ M209), R205 (≠ S210), L247 (≠ C252), N248 (≠ V253), V270 (= V275), G271 (= G276), L272 (≠ I277), F273 (= F278), L295 (= L300), V296 (≠ A301)
- binding zinc ion: E98 (≠ C105), C101 (= C108), C104 (= C111), C112 (= C119)
Sites not aligning to the query:
4cpdA Alcohol dehydrogenase tadh from thermus sp. Atn1
33% identity, 98% coverage: 5:354/358 of query aligns to 1:343/346 of 4cpdA
- active site: C38 (= C42), G39 (= G43), S40 (= S44), H43 (= H47), H59 (= H75), E60 (= E76), C89 (= C105), C92 (= C108), C95 (= C111), C103 (= C119), G107 (≠ A123), D152 (≠ E160), T156 (= T164), K340 (= K351)
- binding nicotinamide-adenine-dinucleotide: G39 (= G43), S40 (= S44), T156 (= T164), G178 (= G186), P179 (≠ T187), V180 (≠ I188), D200 (≠ E208), R201 (≠ M209), R205 (= R213), A243 (≠ C252), V244 (= V253), V266 (= V275), V268 (≠ I277), L292 (= L300), A293 (= A301), F333 (≠ I343)
- binding zinc ion: C38 (= C42), H59 (= H75), C89 (= C105), C92 (= C108), C95 (= C111), C103 (= C119), D152 (≠ E160)
Query Sequence
>WP_027179346.1 NCBI__GCF_000429985.1:WP_027179346.1
MSETMRAAVWHGQKDVRVETVPVPPFPEPGWVKVKVDWCGICGSDLHEYIAGPIFIPTEA
PHPLTGKQGSLILGHEFTGTIVEVGEGVTNVSVGDFVAPDACQHCGECVTCREGRYNVCE
KLAFTGLHNDGAFAKYVNIPAELCFVLPEGISPEEGALIEPLATGFKAVREAGSILGENV
VIIGAGTIGLGTLMAAKAAGAGKIIMLEMSSVRTAKAKECGADVVINPSEVDAVAEIKAM
TNGSGADVSFECVGNKFTGPLAVDVLRNAGRAVIVGIFEEPSSFNFFSLSGTDKKVIGTL
AYTLRDFQGVSALLATGQLKAGPMITGRIELEDIVEKGFLELINNKDENIKIIVRPEE
Or try a new SitesBLAST search
SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory