SitesBLAST
Comparing WP_027721929.1 NCBI__GCF_000425265.1:WP_027721929.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
3o6xA Crystal structure of the type iii glutamine synthetase from bacteroides fragilis (see paper)
40% identity, 96% coverage: 30:726/728 of query aligns to 24:637/638 of 3o6xA
- binding adenosine-5'-diphosphate: E180 (= E224), E244 (= E302), F249 (≠ Y307), N295 (= N353), S297 (= S355), R388 (= R476), E390 (= E478)
- binding magnesium ion: E180 (= E224), E182 (= E226), E237 (= E295), E244 (= E302), H293 (= H351), E390 (= E478)
- binding l-methionine-s-sulfoximine phosphate: E180 (= E224), E182 (= E226), E237 (= E295), G289 (= G347), G291 (= G349), H293 (= H351), R349 (= R407), E354 (= E412), R378 (= R466)
7tenA Glutamine synthetase (see paper)
31% identity, 24% coverage: 220:392/728 of query aligns to 126:284/442 of 7tenA
- binding adenosine-5'-diphosphate: G128 (= G222), E130 (= E224), E182 (≠ K290), D196 (≠ A304), F197 (≠ P305), K198 (≠ V306), Y199 (= Y307), N245 (= N353), S247 (= S355)
- binding l-methionine-s-sulfoximine phosphate: E130 (= E224), E132 (= E226), E187 (= E295), E194 (= E302), N238 (= N346), G239 (= G347), H243 (= H351)
Sites not aligning to the query:
7tf9S L. Monocytogenes gs(14)-q-glnr peptide (see paper)
31% identity, 24% coverage: 220:392/728 of query aligns to 127:285/443 of 7tf9S
Sites not aligning to the query:
7tf6A Glutamine synthetase (see paper)
28% identity, 25% coverage: 220:399/728 of query aligns to 122:287/438 of 7tf6A
Sites not aligning to the query:
7tdvC Glutamine synthetase (see paper)
28% identity, 25% coverage: 220:399/728 of query aligns to 127:292/443 of 7tdvC
- binding adenosine-5'-diphosphate: G129 (= G222), E131 (= E224), E183 (≠ K290), D197 (≠ A304), F198 (≠ P305), K199 (≠ V306), Y200 (= Y307), N246 (= N353), V247 (≠ Y354), S248 (= S355)
- binding magnesium ion: E131 (= E224), E131 (= E224), E133 (= E226), E188 (= E295), E195 (= E302), E195 (= E302), H244 (= H351)
- binding l-methionine-s-sulfoximine phosphate: E131 (= E224), E133 (= E226), E188 (= E295), E195 (= E302), G240 (= G347), H244 (= H351)
Sites not aligning to the query:
8ooqB Glutamine synthetase from Methanothermococcus thermolithotrophicus (see paper)
24% identity, 40% coverage: 222:512/728 of query aligns to 133:367/446 of 8ooqB
Sites not aligning to the query:
8oooA Glutamine synthetase from methanothermococcus thermolithotrophicus in complex with 2-oxoglutarate and mgatp at 2.15 a resolution (see paper)
24% identity, 40% coverage: 222:512/728 of query aligns to 134:368/447 of 8oooA
- binding 2-oxoglutaric acid: P170 (≠ L272), R173 (≠ M275), R174 (≠ M276), S190 (≠ R292)
- binding adenosine-5'-triphosphate: E136 (= E224), E188 (≠ K290), F203 (≠ P305), K204 (≠ V306), F205 (≠ Y307), H251 (≠ N353), S253 (= S355), R325 (≠ P456), R335 (= R476)
Sites not aligning to the query:
P12425 Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I alpha; GSI alpha; EC 6.3.1.2 from Bacillus subtilis (strain 168) (see 5 papers)
26% identity, 40% coverage: 220:512/728 of query aligns to 128:364/444 of P12425
- E132 (= E224) binding Mg(2+)
- E134 (= E226) binding Mg(2+)
- E189 (= E295) binding Mg(2+)
- V190 (= V296) mutation to A: Unable to form stable complex with TnrA. In the presence of glutamine, this mutant partially relieves expression of the glnRA-lacZ fusion, but has no effect on the TnrA-dependent regulation of amtB-lacZ fusion. Resistant to inhibition by MetSox.
- E196 (= E302) binding Mg(2+)
- G241 (= G347) binding L-glutamate
- H245 (= H351) binding Mg(2+)
- G302 (≠ A410) mutation to E: Unable to form stable complex with TnrA. In the presence of glutamine, amtB-lacZ fusion is only 4-fold regulated by TnrA, whereas glnRA-lacZ fusion is derepressed. This mutant retains enzymatic specific activity with a 2-fold decrease of the affinity for glutamate and glutamine compared to the wild-type. Slightly less sensitive to inhibition by glutamine.
- E304 (= E412) mutation to A: Highly resistant to Met-Sox inhibition. 8- and 2-fold increase of the affinity for glutamate and ATP, respectively. Strong decrease of the affinity for ammonium.
- P306 (= P414) mutation to H: Unable to form stable complex with TnrA. In the presence of glutamine, this mutant completely derepresses glnRA-lacZ fusion, whereas amtB-lacZ fusion expression is only partially derepresses.
- E333 (= E478) binding Mg(2+)
Sites not aligning to the query:
- 1 modified: Initiator methionine, Removed
- 59 G→R: Unable to form stable complex with TnrA. In the presence of glutamine, this mutant derepresses amtB-lacZ fusion and glnRA-lacZ fusion.
- 62 Important for inhibition by glutamine; R→A: Highly resistant to inhibition by glutamine and AMP. Regulation by TnrA and GlnR is abolished. Only small differences (less than 2-fold) in its steady-state kinetic constants compared with the wild-type. Similar sensitivity to Met-Sox that compared to the wild-ytpe.
- 424 E→K: Unable to form stable complex with TnrA. In the presence of glutamine, this mutant derepresses amtB-lacZ fusion and glnRA-lacZ fusion. Although it is defective in regulation, this mutant retains enzymatic specific activity and similar affinity for ATP, glutamate and glutamine compared to the wild-type. Slightly less sensitive to inhibition by glutamine.
4lnkA B. Subtilis glutamine synthetase structures reveal large active site conformational changes and basis for isoenzyme specific regulation: structure of gs-glutamate-amppcp complex (see paper)
26% identity, 40% coverage: 220:512/728 of query aligns to 127:363/443 of 4lnkA
- active site: E131 (= E224), E133 (= E226), E188 (= E295), E195 (= E302), H244 (= H351), R315 (≠ L454), E332 (= E478), R334 (= R480)
- binding adenosine-5'-diphosphate: F198 (≠ P305), Y200 (= Y307), N246 (= N353), S248 (= S355), S324 (≠ D463), S328 (≠ T467), R330 (= R476)
- binding glutamic acid: E133 (= E226), E188 (= E295), V189 (= V296), N239 (= N346), G240 (= G347), G242 (= G349), E303 (= E412)
- binding magnesium ion: E131 (= E224), E188 (= E295), E195 (= E302), H244 (= H351), E332 (= E478)
Sites not aligning to the query:
4lniA B. Subtilis glutamine synthetase structures reveal large active site conformational changes and basis for isoenzyme specific regulation: structure of the transition state complex (see paper)
26% identity, 40% coverage: 220:512/728 of query aligns to 127:363/443 of 4lniA
- active site: E131 (= E224), E133 (= E226), E188 (= E295), E195 (= E302), H244 (= H351), R315 (≠ L454), E332 (= E478), R334 (= R480)
- binding adenosine-5'-diphosphate: E131 (= E224), E183 (≠ K290), D197 (≠ A304), Y200 (= Y307), N246 (= N353), S248 (= S355), R320 (= R459), R330 (= R476)
- binding magnesium ion: E131 (= E224), E131 (= E224), E133 (= E226), E188 (= E295), E195 (= E302), E195 (= E302), H244 (= H351), E332 (= E478)
- binding l-methionine-s-sulfoximine phosphate: E133 (= E226), E188 (= E295), H244 (= H351), R297 (vs. gap), E303 (= E412), R315 (≠ L454), R334 (= R480)
Sites not aligning to the query:
4s0rD Structure of gs-tnra complex (see paper)
26% identity, 40% coverage: 220:512/728 of query aligns to 131:367/447 of 4s0rD
- active site: E135 (= E224), E137 (= E226), E192 (= E295), E199 (= E302), H248 (= H351), R319 (≠ L454), E336 (= E478), R338 (= R480)
- binding glutamine: E137 (= E226), E192 (= E295), R301 (vs. gap), E307 (= E412)
- binding magnesium ion: E135 (= E224), E135 (= E224), E199 (= E302), H248 (= H351), H248 (= H351), E336 (= E478)
- binding : D161 (≠ G250), G241 (= G344), V242 (≠ I345), N243 (= N346), G305 (≠ A410), Y306 (≠ N411)
Sites not aligning to the query:
7tfaB Glutamine synthetase (see paper)
30% identity, 20% coverage: 220:366/728 of query aligns to 125:257/441 of 7tfaB
Sites not aligning to the query:
7tdpA Structure of paenibacillus polymyxa gs bound to met-sox-p-adp (transition state complex) to 1.98 angstom (see paper)
30% identity, 20% coverage: 220:366/728 of query aligns to 123:255/439 of 7tdpA
- binding adenosine-5'-diphosphate: N123 (= N220), G125 (= G222), E127 (= E224), E179 (≠ K290), D193 (≠ A304), Y196 (= Y307), N242 (= N353), S244 (= S355)
- binding magnesium ion: E127 (= E224), E127 (= E224), E129 (= E226), E184 (= E295), E191 (= E302), E191 (= E302), H240 (= H351)
- binding l-methionine-s-sulfoximine phosphate: E127 (= E224), E129 (= E226), E184 (= E295), E191 (= E302), G236 (= G347), H240 (= H351)
Sites not aligning to the query:
8tfkA Glutamine synthetase (see paper)
27% identity, 25% coverage: 220:399/728 of query aligns to 124:289/440 of 8tfkA
- binding adenosine-5'-diphosphate: E128 (= E224), D194 (≠ A304), F195 (≠ P305), F197 (≠ Y307), N243 (= N353)
- binding magnesium ion: E128 (= E224), E128 (= E224), E130 (= E226), E185 (= E295), E192 (= E302), E192 (= E302), H241 (= H351)
- binding l-methionine-s-sulfoximine phosphate: E128 (= E224), E130 (= E226), E185 (= E295), E192 (= E302), G237 (= G347), H241 (= H351)
Sites not aligning to the query:
8ooxB Glutamine synthetase (see paper)
27% identity, 25% coverage: 218:399/728 of query aligns to 121:287/438 of 8ooxB
8oozA Glutamine synthetase (see paper)
27% identity, 25% coverage: 218:399/728 of query aligns to 113:279/430 of 8oozA
Sites not aligning to the query:
8ufjB Glutamine synthetase (see paper)
28% identity, 25% coverage: 220:399/728 of query aligns to 128:293/444 of 8ufjB
Sites not aligning to the query:
7cquA Gmas/adp/metsox-p complex (see paper)
26% identity, 35% coverage: 150:407/728 of query aligns to 48:286/429 of 7cquA