SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_027723114.1 NCBI__GCF_000425265.1:WP_027723114.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

5odcD Heterodisulfide reductase / [nife]-hydrogenase complex from methanothermococcus thermolithotrophicus at 2.3 a resolution (see paper)
51% identity, 88% coverage: 8:142/154 of query aligns to 3:137/138 of 5odcD

query
sites
5odcD
E
 
E
L
 
P
R
 
K
I
 
I
V
 
I
G
 
G
F
 
F
L
 
C
C
|
C
N
 
N
W
 
W
C
 
C
S
 
T
Y
 
Y
G
 
G
G
 
G
A
 
A
D
 
D
T
 
T
A
 
A
G
 
G
V
 
V
G
 
G
R
 
R
F
 
M
D
 
Q
Q
 
Y
P
 
P
T
 
P
D
 
S
L
 
I
R
 
R
I
 
I
I
 
I
K
 
R
V
 
V
P
 
M
C
|
C
S
|
S
G
 
G
R
 
R
I
 
I
D
 
E
P
 
P
L
 
S
F
 
L
I
 
I
V
 
L
K
 
K
T
 
A
L
 
F
M
 
K
S
 
E
G
 
G
A
 
A
D
 
D
G
 
G
V
 
V
L
 
F
V
 
V
S
 
G
G
 
G
C
|
C
H
 
H
P
 
L
N
 
G
D
 
D
C
|
C
H
|
H
Y
 
Y
A
 
D
E
 
S
G
 
G
N
 
N
F
 
Y
Y
 
K
A
 
W
R
 
Q
R
 
R
R
 
R
L
 
V
E
 
M
M
 
M
L
 
L
K
 
Y
R
 
E
F
 
L
I
 
L
P
 
E
M
 
E
L
 
L
G
 
G
I
 
I
D
 
E
P
 
K
N
 
E
R
 
R
F
 
L
D
 
N
Y
 
H
T
 
E
W
 
W
V
 
I
S
 
S
A
 
A
S
 
S
E
 
E
G
 
G
Q
 
E
R
 
K
W
 
F
Q
 
Q
E
 
N
V
 
T
V
 
M
T
 
K
K
 
D
F
 
F
T
 
Y
E
 
N
Q
 
K
I
 
I
H
 
E
K
 
A
L
 
L
G
 
G
P
 
P
A
 
C
Q
 
K
K
 
L
I
 
K
E
 
E
G
 
E
A
 
L
D
 
D

7bkbF Formate dehydrogenase - heterodisulfide reductase - formylmethanofuran dehydrogenase complex from methanospirillum hungatei (hexameric, composite structure) (see paper)
52% identity, 82% coverage: 10:135/154 of query aligns to 5:130/137 of 7bkbF

query
sites
7bkbF
R
 
Q
I
 
I
V
 
L
G
 
A
F
 
I
L
 
I
C
|
C
N
 
N
W
|
W
C
 
C
S
 
S
Y
 
Y
G
 
A
G
 
G
A
 
A
D
 
D
T
 
L
A
 
A
G
 
G
V
 
G
G
 
A
R
 
R
F
 
I
D
 
Q
Q
 
Y
P
 
P
T
 
P
D
 
T
L
 
V
R
 
R
I
 
A
I
 
I
K
 
R
V
 
V
P
 
M
C
|
C
S
x
T
G
 
G
R
 
R
I
 
V
D
 
D
P
 
M
L
 
L
F
 
F
I
 
I
V
 
L
K
 
K
T
 
A
L
 
F
M
 
V
S
 
E
G
 
G
A
 
A
D
 
D
G
 
G
V
 
V
L
 
L
V
 
V
S
 
S
G
 
G
C
|
C
H
 
H
P
 
F
N
 
G
D
 
D
C
|
C
H
|
H
Y
 
Y
A
 
L
E
 
E
G
 
G
N
 
N
F
 
Y
Y
 
K
A
 
A
R
 
A
R
 
K
R
 
R
L
 
M
E
 
F
M
 
M
L
 
I
K
 
K
R
 
N
F
 
L
I
 
L
P
 
R
M
 
N
L
 
I
G
 
G
I
 
L
D
 
D
P
 
D
N
 
R
R
 
R
F
 
F
D
 
R
Y
 
M
T
 
T
W
 
F
V
 
V
S
 
S
A
 
A
S
 
S
E
 
E
G
 
G
Q
 
A
R
 
K
W
 
W
Q
 
G
E
 
M
V
 
V
V
 
M
T
 
E
K
 
D
F
 
V
T
 
T
E
 
N
Q
 
T
I
 
I
H
 
K
K
 
E
L
 
L
G
 
G
P
 
P
A
 
S

Query Sequence

>WP_027723114.1 NCBI__GCF_000425265.1:WP_027723114.1
MPVLEGKELRIVGFLCNWCSYGGADTAGVGRFDQPTDLRIIKVPCSGRIDPLFIVKTLMS
GADGVLVSGCHPNDCHYAEGNFYARRRLEMLKRFIPMLGIDPNRFDYTWVSASEGQRWQE
VVTKFTEQIHKLGPAQKIEGADAEETLKLMEASL

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory