Comparing WP_028310214.1 NCBI__GCF_000482785.1:WP_028310214.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
33% identity, 98% coverage: 2:252/256 of query aligns to 1:253/254 of 1g6hA
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
33% identity, 98% coverage: 2:252/256 of query aligns to 1:253/253 of 1g9xB
6mjpA Lptb(e163q)fgc from vibrio cholerae (see paper)
31% identity, 97% coverage: 5:252/256 of query aligns to 2:235/240 of 6mjpA
P04983 Ribose import ATP-binding protein RbsA; EC 7.5.2.7 from Escherichia coli (strain K12) (see paper)
32% identity, 95% coverage: 3:246/256 of query aligns to 2:234/501 of P04983
1oxvD Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
33% identity, 94% coverage: 8:247/256 of query aligns to 6:235/353 of 1oxvD
1oxvA Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
33% identity, 94% coverage: 8:247/256 of query aligns to 6:235/353 of 1oxvA
1oxuA Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
33% identity, 94% coverage: 8:247/256 of query aligns to 6:235/353 of 1oxuA
Q97UY8 Glucose import ATP-binding protein GlcV; EC 7.5.2.- from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (Sulfolobus solfataricus) (see paper)
33% identity, 94% coverage: 8:247/256 of query aligns to 6:235/353 of Q97UY8
6s8nB Cryo-em structure of lptb2fgc in complex with lipopolysaccharide (see paper)
31% identity, 94% coverage: 13:252/256 of query aligns to 10:235/238 of 6s8nB
6s8gA Cryo-em structure of lptb2fgc in complex with amp-pnp (see paper)
31% identity, 94% coverage: 13:252/256 of query aligns to 10:235/238 of 6s8gA
6mhzA Vanadate trapped cryo-em structure of e.Coli lptb2fg transporter (see paper)
31% identity, 94% coverage: 13:252/256 of query aligns to 10:235/235 of 6mhzA
6mbnA Lptb e163q in complex with atp (see paper)
30% identity, 94% coverage: 13:252/256 of query aligns to 11:236/241 of 6mbnA
6b89A E. Coli lptb in complex with adp and novobiocin (see paper)
31% identity, 93% coverage: 13:251/256 of query aligns to 10:234/234 of 6b89A
4p31A Crystal structure of a selenomethionine derivative of e. Coli lptb in complex with adp-magensium (see paper)
31% identity, 93% coverage: 13:251/256 of query aligns to 10:234/234 of 4p31A
P69874 Spermidine/putrescine import ATP-binding protein PotA; EC 7.6.2.11 from Escherichia coli (strain K12) (see 3 papers)
31% identity, 97% coverage: 5:252/256 of query aligns to 17:249/378 of P69874
Sites not aligning to the query:
1ji0A Crystal structure analysis of the abc transporter from thermotoga maritima
32% identity, 99% coverage: 1:254/256 of query aligns to 2:240/240 of 1ji0A
6b8bA E. Coli lptb in complex with adp and a novobiocin derivative (see paper)
30% identity, 93% coverage: 13:250/256 of query aligns to 10:233/233 of 6b8bA
3c4jA Abc protein artp in complex with atp-gamma-s
31% identity, 94% coverage: 5:244/256 of query aligns to 3:229/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
31% identity, 94% coverage: 5:244/256 of query aligns to 3:229/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
31% identity, 94% coverage: 5:244/256 of query aligns to 3:229/242 of 2olkA
>WP_028310214.1 NCBI__GCF_000482785.1:WP_028310214.1
MSQTILHVSGVNKRFGGLQALSEVELEIRQGQIYALIGPNGAGKTTFFNVITGLYTPDSG
TFMLGGQPYAPTAVHKVAEAGIARTFQNIRLFPDMTALENVMVGRHVRTKSGLVGAIFKT
RAERAEEAAIRHRAHELLEFVGIARYAAFQARTLSYGDQRRLEIARALATDPKLLALDEP
AAGMNATEKLQLRDLLQRIKSEGRTILIIEHDVKLIMGLSDRVTVLDYGKVIAAGAPAEV
QKNPAVIAAYLGGAHA
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory