SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_028320196.1 NCBI__GCF_000422285.1:WP_028320196.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

8a8oD Paps reductase from methanothermococcus thermolithotrophicus refined to 1.45 a (see paper)
38% identity, 86% coverage: 10:77/79 of query aligns to 2:58/102 of 8a8oD

query
sites
8a8oD
I
|
I
T
 
R
I
 
I
D
 
I
R
 
E
E
 
E
L
 
I
C
|
C
K
x
I
G
|
G
C
|
C
Q
x
G
L
 
L
C
|
C
I
 
T
S
 
K
V
 
V
C
|
C
P
|
P
K
 
G
H
 
N
L
 
L
I
 
L
V
 
-
V
 
-
S
 
-
D
 
-
R
 
-
L
 
-
N
 
-
Q
 
-
K
 
-
G
 
-
Y
 
-
Y
 
Y
P
 
Q
A
 
R
E
 
E
F
 
D
T
 
G
E
 
K
N
x
S
E
 
E
T
 
I
T
 
M
E
 
D
D
 
K
R
 
R
Q
 
D
C
|
C
T
x
W
A
x
D
C
|
C
A
|
A
M
 
A
C
|
C
A
 
V
T
 
K
I
 
E
C
|
C
P
 
P
D
 
V
L
 
N
A
 
A
I
|
I
E
 
E
V
 
M
Y
 
Y

Query Sequence

>WP_028320196.1 NCBI__GCF_000422285.1:WP_028320196.1
MAKKEKTGRITIDRELCKGCQLCISVCPKHLIVVSDRLNQKGYYPAEFTENETTEDRQCT
ACAMCATICPDLAIEVYRE

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory