Comparing WP_028583721.1 NCBI__GCF_000429965.1:WP_028583721.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
7ahhC Opua inhibited inward-facing, sbd docked (see paper)
44% identity, 96% coverage: 4:394/409 of query aligns to 3:380/382 of 7ahhC
7aheC Opua inhibited inward facing (see paper)
44% identity, 96% coverage: 4:394/409 of query aligns to 3:380/382 of 7aheC
7ahdC Opua (e190q) occluded (see paper)
57% identity, 63% coverage: 4:261/409 of query aligns to 3:260/260 of 7ahdC
2d62A Crystal structure of multiple sugar binding transport atp- binding protein
38% identity, 63% coverage: 20:275/409 of query aligns to 3:253/375 of 2d62A
1g291 Malk (see paper)
37% identity, 61% coverage: 26:275/409 of query aligns to 2:250/372 of 1g291
Sites not aligning to the query:
P69874 Spermidine/putrescine import ATP-binding protein PotA; EC 7.6.2.11 from Escherichia coli (strain K12) (see 3 papers)
39% identity, 53% coverage: 48:264/409 of query aligns to 38:248/378 of P69874
Sites not aligning to the query:
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
38% identity, 65% coverage: 3:267/409 of query aligns to 2:239/241 of 4u00A
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
37% identity, 58% coverage: 32:267/409 of query aligns to 6:239/240 of 4ymuJ
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
36% identity, 60% coverage: 23:266/409 of query aligns to 1:243/343 of P30750
Sites not aligning to the query:
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
35% identity, 60% coverage: 23:266/409 of query aligns to 2:244/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
35% identity, 60% coverage: 23:266/409 of query aligns to 2:244/344 of 3tuiC
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
35% identity, 60% coverage: 23:266/409 of query aligns to 2:244/344 of 6cvlD
8hplC Lpqy-sugabc in state 1 (see paper)
38% identity, 55% coverage: 42:264/409 of query aligns to 16:232/384 of 8hplC
Sites not aligning to the query:
8hprC Lpqy-sugabc in state 4 (see paper)
38% identity, 55% coverage: 42:264/409 of query aligns to 18:234/363 of 8hprC
Sites not aligning to the query:
8hprD Lpqy-sugabc in state 4 (see paper)
38% identity, 55% coverage: 42:264/409 of query aligns to 18:234/362 of 8hprD
Sites not aligning to the query:
3c4jA Abc protein artp in complex with atp-gamma-s
39% identity, 53% coverage: 50:267/409 of query aligns to 26:241/242 of 3c4jA
Sites not aligning to the query:
3c41J Abc protein artp in complex with amp-pnp/mg2+
39% identity, 53% coverage: 50:267/409 of query aligns to 26:241/242 of 3c41J
Sites not aligning to the query:
2olkA Abc protein artp in complex with adp-beta-s
39% identity, 53% coverage: 50:267/409 of query aligns to 26:241/242 of 2olkA
Sites not aligning to the query:
2oljA Abc protein artp in complex with adp/mg2+
39% identity, 53% coverage: 50:267/409 of query aligns to 26:241/242 of 2oljA
Sites not aligning to the query:
P9WQI3 Trehalose import ATP-binding protein SugC; MtbSugC; Nucleotide-binding domain of SugABC transporter; NBD of SugABC transporter; SugABC transporter ATPase SugC; EC 7.5.2.- from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
36% identity, 55% coverage: 42:264/409 of query aligns to 19:235/393 of P9WQI3
>WP_028583721.1 NCBI__GCF_000429965.1:WP_028583721.1
MDIITVKNLYKVFGADPAKGLALVKAGNSKEEIYEQTGLTVGVQDASFTVAKGEIFVVMG
LSGSGKSTLVRMLNRLIEPTAGEVWVDGDNVLTMNRDQLVKFRRSKTSMVFQSFALMPHL
NVLDNVCFGLELDGMPRPQREERGMDALKQVGLEGWEKAAPGELSGGMQQRVGLARGLAM
DPDILLMDEAFSALDPLIRSEMQDELLKLQDRHERTIVFISHDLDEALRIGDRIAIMEGG
RVVQVGSPEEILQNPADDYVRAFFRGVDPTGVISAGDIVRDNQPKVIWHTPEGSPRATLE
LLNNQDREFGYVVGSDRKFYGVVSTDSLRDLLEAKNGKGNIEQAFLEAATPVQEGECLQD
ILPQVASHLWPIPVVDENNLYQGVVSKNRFLRTLYRAGNDNGNGNDLDQ
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory