Comparing WP_028988618.1 NCBI__GCF_000423825.1:WP_028988618.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
7chaI Cryo-em structure of p.Aeruginosa mlafebd with amppnp (see paper)
59% identity, 95% coverage: 10:268/274 of query aligns to 4:261/262 of 7chaI
7d0aB Acinetobacter mlafedb complex in adp-vanadate trapped vclose conformation (see paper)
58% identity, 92% coverage: 6:258/274 of query aligns to 1:253/263 of 7d0aB
7d08B Acinetobacter mlafedb complex in atp-bound vtrans1 conformation (see paper)
58% identity, 92% coverage: 6:258/274 of query aligns to 1:253/263 of 7d08B
6z5uK Cryo-em structure of the a. Baumannii mlabdef complex bound to appnhp (see paper)
59% identity, 92% coverage: 8:258/274 of query aligns to 1:251/253 of 6z5uK
7ch8I Cryo-em structure of p.Aeruginosa mlafebd with adp-v (see paper)
58% identity, 95% coverage: 10:268/274 of query aligns to 4:258/259 of 7ch8I
7ch6C Cryo-em structure of e.Coli mlafeb with amppnp (see paper)
57% identity, 95% coverage: 8:268/274 of query aligns to 3:262/265 of 7ch6C
6xgyA Crystal structure of e. Coli mlafb abc transport subunits in the dimeric state (see paper)
57% identity, 95% coverage: 8:268/274 of query aligns to 3:262/264 of 6xgyA
7cgnB The overall structure of the mlafedb complex in atp-bound eqtall conformation (mutation of e170q on mlaf) (see paper)
57% identity, 95% coverage: 8:268/274 of query aligns to 3:262/263 of 7cgnB
Q9AT00 Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic; ABC transporter I family member 13; ABC transporter ABCI.13; AtABCI13; Non-intrinsic ABC protein 11; AtNAP11 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
38% identity, 90% coverage: 9:255/274 of query aligns to 84:345/345 of Q9AT00
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
35% identity, 93% coverage: 17:272/274 of query aligns to 11:261/343 of P30750
Sites not aligning to the query:
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
34% identity, 93% coverage: 17:272/274 of query aligns to 12:262/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
34% identity, 93% coverage: 17:272/274 of query aligns to 12:262/344 of 3tuiC
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
34% identity, 93% coverage: 17:272/274 of query aligns to 12:262/344 of 6cvlD
1oxvD Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
37% identity, 80% coverage: 17:236/274 of query aligns to 13:231/353 of 1oxvD
1oxvA Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
37% identity, 80% coverage: 17:236/274 of query aligns to 13:231/353 of 1oxvA
1oxuA Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
37% identity, 80% coverage: 17:236/274 of query aligns to 13:231/353 of 1oxuA
Q97UY8 Glucose import ATP-binding protein GlcV; EC 7.5.2.- from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (Sulfolobus solfataricus) (see paper)
37% identity, 80% coverage: 17:236/274 of query aligns to 13:231/353 of Q97UY8
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
32% identity, 81% coverage: 24:245/274 of query aligns to 16:236/240 of 4ymuJ
Sites not aligning to the query:
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
33% identity, 82% coverage: 9:233/274 of query aligns to 2:223/241 of 4u00A
3c4jA Abc protein artp in complex with atp-gamma-s
33% identity, 77% coverage: 24:235/274 of query aligns to 18:227/242 of 3c4jA
Sites not aligning to the query:
>WP_028988618.1 NCBI__GCF_000423825.1:WP_028988618.1
MSPAHNNNILEIRNLGFFRADRAILSDLNIRIPRGQIVAILGGSGTGKTTLLQLMGGQLR
PRRGEVLLDGVALASLGQQELYEARKRMGMLFQHSALLTDLSVFENVAFPLRRHTRLSEP
VLRTLVLMKLEAVGLRGAHALMPSQLSGGMARRVALARAVVMDPDLILYDEPFTGLDPIS
LGVVVSLIKRLNQALGASSVVVSHDVAETLSIADYAYILANGRVIGEGTPAALRDSRSPL
VRQFLDGAPDGPVPFHYAAPLNYEQDLLNARPAP
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory