Comparing WP_028997005.1 NCBI__GCF_000430725.1:WP_028997005.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
4z9nB Abc transporter / periplasmic binding protein from brucella ovis with glutathione bound
55% identity, 92% coverage: 27:342/342 of query aligns to 7:324/324 of 4z9nB
2ia4B Crystal structure of novel amino acid binding protein from shigella flexneri
30% identity, 65% coverage: 19:239/342 of query aligns to 1:221/278 of 2ia4B
2vhaA Debp (see paper)
29% identity, 64% coverage: 20:239/342 of query aligns to 1:220/276 of 2vhaA
2v25A Structure of the campylobacter jejuni antigen peb1a, an aspartate and glutamate receptor with bound aspartate (see paper)
27% identity, 62% coverage: 28:240/342 of query aligns to 3:207/231 of 2v25A
1xt8B Crystal structure of cysteine-binding protein from campylobacter jejuni at 2.0 a resolution (see paper)
27% identity, 76% coverage: 27:285/342 of query aligns to 6:247/251 of 1xt8B
5t0wA Crystal structure of the ancestral amino acid-binding protein anccdt- 1, a precursor of cyclohexadienyl dehydratase
30% identity, 68% coverage: 27:257/342 of query aligns to 2:218/229 of 5t0wA
8ovoA X-ray structure of the sf-iglusnfr-s72a in complex with l-aspartate
28% identity, 63% coverage: 24:239/342 of query aligns to 2:218/503 of 8ovoA
6h2tA Glnh bound to glu, mycobacterium tuberculosis (see paper)
27% identity, 63% coverage: 13:229/342 of query aligns to 30:237/288 of 6h2tA
6h20A Glnh bound to asn, mycobacterium tuberculosis (see paper)
27% identity, 63% coverage: 13:229/342 of query aligns to 29:236/287 of 6h20A
6h1uA Glnh bound to asp, mycobacterium tuberculosis (see paper)
27% identity, 63% coverage: 13:229/342 of query aligns to 29:236/287 of 6h1uA
4zv1A An ancestral arginine-binding protein bound to arginine (see paper)
30% identity, 60% coverage: 34:238/342 of query aligns to 3:199/226 of 4zv1A
4zv2A An ancestral arginine-binding protein bound to glutamine (see paper)
30% identity, 60% coverage: 34:238/342 of query aligns to 3:197/225 of 4zv2A
5eyfB Crystal structure of solute-binding protein from enterococcus faecium with bound glutamate
26% identity, 63% coverage: 28:243/342 of query aligns to 6:213/243 of 5eyfB
2yjpA Crystal structure of the solute receptors for l-cysteine of neisseria gonorrhoeae (see paper)
27% identity, 64% coverage: 27:246/342 of query aligns to 3:210/247 of 2yjpA
6svfA Crystal structure of the p235gk mutant of argbp from t. Maritima (see paper)
26% identity, 65% coverage: 28:250/342 of query aligns to 3:213/229 of 6svfA
3vv5A Crystal structure of ttc0807 complexed with (s)-2-aminoethyl-l- cysteine (aec) (see paper)
27% identity, 38% coverage: 26:156/342 of query aligns to 4:128/237 of 3vv5A
Sites not aligning to the query:
3vvfA Crystal structure of ttc0807 complexed with arginine (see paper)
27% identity, 38% coverage: 26:156/342 of query aligns to 8:132/241 of 3vvfA
Sites not aligning to the query:
3vveA Crystal structure of ttc0807 complexed with lysine (see paper)
27% identity, 38% coverage: 26:156/342 of query aligns to 8:132/241 of 3vveA
Sites not aligning to the query:
3vvdA Crystal structure of ttc0807 complexed with ornithine (see paper)
27% identity, 38% coverage: 26:156/342 of query aligns to 8:132/241 of 3vvdA
Sites not aligning to the query:
3k4uE Crystal structure of putative binding component of abc transporter from wolinella succinogenes dsm 1740 complexed with lysine
23% identity, 65% coverage: 34:257/342 of query aligns to 3:216/234 of 3k4uE
>WP_028997005.1 NCBI__GCF_000430725.1:WP_028997005.1
MKTLTPLLAPLAAALAFTAAPALAGKTLDAIKQRGQVVVGVSTGVAGFSAADSQGRWSGF
DVDFGRAFAAAVLGDADKVRWVPLSSQQRFTALQSGEVDVLSRNTSFTLTRDASLGLQQT
AINFFDGQGFMVPAKTKVKSAKQLKGASVCLQSGTTTEKNLTDFSRTNNLNLKPVVFEKI
EAANAAYFSGRCQAYTTDASGLAAIRSREAKDPKEHVILPELISKEPLGPLVRRGDDEWF
TVVKWVVYGLIEAEEAGITQANADKLKAESTDPVVQRLLGKSDDMGKLLGLDRDWLLRAV
KAVGNYGEIYERNVGEKTPVGLPRGKNALWSQGGLLYAPPVR
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory