Comparing WP_028997224.1 NCBI__GCF_000430725.1:WP_028997224.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
1ji0A Crystal structure analysis of the abc transporter from thermotoga maritima
48% identity, 93% coverage: 9:247/256 of query aligns to 3:239/240 of 1ji0A
6mjpA Lptb(e163q)fgc from vibrio cholerae (see paper)
31% identity, 92% coverage: 12:246/256 of query aligns to 2:235/240 of 6mjpA
6mhzA Vanadate trapped cryo-em structure of e.Coli lptb2fg transporter (see paper)
34% identity, 91% coverage: 13:246/256 of query aligns to 3:235/235 of 6mhzA
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
29% identity, 92% coverage: 12:246/256 of query aligns to 4:253/253 of 1g9xB
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
29% identity, 92% coverage: 12:246/256 of query aligns to 4:253/254 of 1g6hA
6s8nB Cryo-em structure of lptb2fgc in complex with lipopolysaccharide (see paper)
34% identity, 91% coverage: 13:246/256 of query aligns to 3:235/238 of 6s8nB
6s8gA Cryo-em structure of lptb2fgc in complex with amp-pnp (see paper)
34% identity, 91% coverage: 13:246/256 of query aligns to 3:235/238 of 6s8gA
6mbnA Lptb e163q in complex with atp (see paper)
33% identity, 91% coverage: 13:246/256 of query aligns to 4:236/241 of 6mbnA
6b89A E. Coli lptb in complex with adp and novobiocin (see paper)
33% identity, 91% coverage: 13:245/256 of query aligns to 3:234/234 of 6b89A
4p31A Crystal structure of a selenomethionine derivative of e. Coli lptb in complex with adp-magensium (see paper)
33% identity, 91% coverage: 13:245/256 of query aligns to 3:234/234 of 4p31A
6b8bA E. Coli lptb in complex with adp and a novobiocin derivative (see paper)
33% identity, 91% coverage: 13:244/256 of query aligns to 3:233/233 of 6b8bA
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
29% identity, 85% coverage: 12:229/256 of query aligns to 1:218/240 of 4ymuJ
3c4jA Abc protein artp in complex with atp-gamma-s
30% identity, 89% coverage: 12:239/256 of query aligns to 3:230/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
30% identity, 89% coverage: 12:239/256 of query aligns to 3:230/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
30% identity, 89% coverage: 12:239/256 of query aligns to 3:230/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
30% identity, 89% coverage: 12:239/256 of query aligns to 3:230/242 of 2oljA
P0AAH0 Phosphate import ATP-binding protein PstB; ABC phosphate transporter; Phosphate-transporting ATPase; EC 7.3.2.1 from Escherichia coli (strain K12) (see paper)
29% identity, 91% coverage: 13:245/256 of query aligns to 11:252/257 of P0AAH0
Sites not aligning to the query:
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
28% identity, 89% coverage: 12:239/256 of query aligns to 2:228/241 of 4u00A
Q9AT00 Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic; ABC transporter I family member 13; ABC transporter ABCI.13; AtABCI13; Non-intrinsic ABC protein 11; AtNAP11 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
31% identity, 93% coverage: 7:244/256 of query aligns to 79:334/345 of Q9AT00
P19566 Maltose/maltodextrin import ATP-binding protein MalK; EC 7.5.2.1 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see paper)
32% identity, 91% coverage: 13:246/256 of query aligns to 4:235/369 of P19566
Sites not aligning to the query:
>WP_028997224.1 NCBI__GCF_000430725.1:WP_028997224.1
MSATTSSQAEVLLDVRDLSVAYGRIEALAGVSLRVHAGEIVTVIGPNGAGKSTLLNALMG
ALPPRGGEIRFAGEALPAGQIGARVARGLALVPEQRALFGSMSVLDNLELGAYRFLADAA
QRRGQALEEVYELFPRLKERRHQAAATLSGGERQMLALGRALMGRPRLLMLDEPSLGLAP
LIVHDIFRIIDTLRRRGVAILLVEQNARAALRLAQRGYVLELGRVVVEGEAHTLAGDPRI
VEAYLGMGAHQDRLVA
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory