Comparing WP_028997432.1 NCBI__GCF_000430725.1:WP_028997432.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 1 hits to proteins with known functional sites (download)
8b01B Cryo-em structure of the tripartite atp-independent periplasmic (trap) transporter siaqm from photobacterium profundum in a nanodisc (see paper)
37% identity, 97% coverage: 13:427/429 of query aligns to 11:421/427 of 8b01B
>WP_028997432.1 NCBI__GCF_000430725.1:WP_028997432.1
MELTVLTLSFSALLILGVPVAFSIGLASIATVLYSGMPVEIVFQKMVGGMQVFSFLAIPF
FVFAGELMLYGGIADRIVRFANSLVGHVRGGLGMSNVVGCTLFGGVAGSALADVSAMGSV
MIPLMKKEGYDADYAVNVTTHAALVGVLMPTSHNLIIFTLATTGIASVSVLSLILAGIIP
ALLLTFCNLAAAYYVARKRGYPIRGGFPGWAEVLRAFLGSLPGLLIVVIILAGILSGIFT
ATESAATAVFWALLVTVLVYKTLSWKDFIKACAKACKATGVVLLLIGISSAFGYFMALYE
VPQKTGELMQSISSNPLVIFLMINVMLFILGTFLDMAATILVCTPIFLPIAVQYGMDPVQ
FGIVMLINCALGLNTPPVGVTQFVGCAIGGISVGQVMKSILPFYGALGVCLALVTYVPAF
SMWLPNMFR
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory