Comparing WP_028999723.1 NCBI__GCF_000430725.1:WP_028999723.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
7bbrA Crystal structure of the sugar acid binding protein dctpam from advenella mimigardefordensis strain dpn7t (see paper)
41% identity, 91% coverage: 26:333/339 of query aligns to 2:309/310 of 7bbrA
7bcrA Crystal structure of the sugar acid binding protein dctpam from advenella mimigardefordensis strain dpn7t in complex with galactonate (see paper)
41% identity, 91% coverage: 26:333/339 of query aligns to 1:308/310 of 7bcrA
7bcpA Crystal structure of the sugar acid binding protein dctpam from advenella mimigardefordensis strain dpn7t in complex with gluconate (see paper)
41% identity, 91% coverage: 26:333/339 of query aligns to 1:308/310 of 7bcpA
7bcoA Crystal structure of the sugar acid binding protein dctpam from advenella mimigardefordensis strain dpn7t in complex with d-foconate (see paper)
41% identity, 91% coverage: 26:333/339 of query aligns to 1:308/310 of 7bcoA
7bcnA Crystal structure of the sugar acid binding protein dctpam from advenella mimigardefordensis strain dpn7t in complex with xylonic acid (see paper)
41% identity, 91% coverage: 26:333/339 of query aligns to 1:308/310 of 7bcnA
4xeqB Crystal structure of a trap periplasmic solute binding protein from desulfovibrio vulgaris (deval_0042, target efi-510114) bound to copurified (r)-pantoic acid
34% identity, 83% coverage: 29:310/339 of query aligns to 1:279/304 of 4xeqB
4pddA Crystal structure of a trap periplasmic solute binding protein from polaromonas sp js666 (bpro_0088, target efi-510167) bound to d- erythronate (see paper)
35% identity, 86% coverage: 46:336/339 of query aligns to 18:302/303 of 4pddA
Sites not aligning to the query:
4pdhA Crystal structure of a trap periplasmic solute binding protein from polaromonas sp js666 (bpro_1871, target efi-510164) bound to d- erythronate (see paper)
34% identity, 90% coverage: 31:335/339 of query aligns to 3:298/301 of 4pdhA
4p9kA Crystal structure of a trap periplasmic solute binding protein from verminephrobacter eiseniae ef01-2 (veis_3954, target efi-510324) a nephridial symbiont of the earthworm eisenia foetida, bound to d- erythronate with residual density suggestive of superposition with copurified alternative ligand. (see paper)
35% identity, 78% coverage: 31:293/339 of query aligns to 5:267/303 of 4p9kA
4pakA Crystal structure of a trap periplasmic solute binding protein from verminephrobacter eiseniae ef01-2 (veis_3954, target efi-510324) a nephridial symbiont of the earthworm eisenia foetida, bound to (r)- pantoic acid (see paper)
35% identity, 78% coverage: 31:293/339 of query aligns to 6:268/304 of 4pakA
4x8rA Crystal structure of a trap periplasmic solute binding protein from rhodobacter sphaeroides (rsph17029_2138, target efi-510205) with bound glucuronate
35% identity, 75% coverage: 41:293/339 of query aligns to 15:267/304 of 4x8rA
Sites not aligning to the query:
4n8yA Crystal structure of a trap periplasmic solute binding protein from bradyrhizobium sp. Btai1 b (bbta_0128), target efi-510056 (bbta_0128), complex with alpha/beta-d-galacturonate (see paper)
35% identity, 74% coverage: 42:293/339 of query aligns to 13:264/300 of 4n8yA
Sites not aligning to the query:
8te9B Crystal structure of an isethionate bound substrate binding protein (isep) from an isethionate trap transporter
36% identity, 85% coverage: 41:327/339 of query aligns to 15:304/309 of 8te9B
Sites not aligning to the query:
4nq8B Crystal structure of a trap periplasmic solute binding protein from bordetella bronchispeptica (bb3421), target efi-510039, with density modeled as pantoate (see paper)
34% identity, 74% coverage: 47:296/339 of query aligns to 19:268/301 of 4nq8B
Sites not aligning to the query:
Q0B2F6 Solute-binding protein Bamb_6123 from Burkholderia ambifaria (strain ATCC BAA-244 / DSM 16087 / CCUG 44356 / LMG 19182 / AMMD) (Burkholderia cepacia (strain AMMD)) (see paper)
31% identity, 98% coverage: 5:335/339 of query aligns to 9:328/328 of Q0B2F6
4x04A Crystal structure of a trap periplasmic solute binding protein from citrobacter koseri (cko_04899, target efi-510094) with bound d- glucuronate
33% identity, 86% coverage: 30:321/339 of query aligns to 2:288/301 of 4x04A
4xfeA Crystal structure of a trap periplasmic solute binding protein from pseudomonas putida f1 (pput_1203), target efi-500184, with bound d- glucuronate
32% identity, 77% coverage: 32:292/339 of query aligns to 3:264/306 of 4xfeA
4p8bA Crystal structure of a trap periplasmic solute binding protein from ralstonia eutropha h16 (h16_a1328), target efi-510189, with bound (s)-2-hydroxy-2-methyl-3-oxobutanoate ((s)-2-acetolactate) (see paper)
31% identity, 86% coverage: 43:333/339 of query aligns to 16:313/314 of 4p8bA
4n17A Crystal structure of a trap periplasmic solute binding protein from burkholderia ambifaria (bam_6123), target efi-510059, with bound beta-d-galacturonate (see paper)
32% identity, 86% coverage: 43:332/339 of query aligns to 14:299/301 of 4n17A
Sites not aligning to the query:
4n15A Crystal structure of a trap periplasmic solute binding protein from burkholderia ambifaria (bam_6123), target efi-510059, with bound beta-d-glucuronate (see paper)
32% identity, 86% coverage: 43:332/339 of query aligns to 14:299/301 of 4n15A
Sites not aligning to the query:
>WP_028999723.1 NCBI__GCF_000430725.1:WP_028999723.1
MTLRRTLLAAALAGASLLSLPALAADIQARTIKFPAASNKGHPQVMGVEKFAELVAQKSG
GKLTVKPFPGGTLGPDAQVVSAMQGGTVEMNVMNASLLAGNVKEMAVFDYPFMFNNVKEA
DAVADGPVGRKLLDKLQERGLVGLAYWDLGFRQMHTVKKPIQKADDLKGMKMRVIPTSQY
VDFMNAIGAVATPMPYTETYTALEQGAIDGMTNPLLNIVNEKFYEVSKHLTLTNHMYTPQ
AVIVSKKFWDKLSADEKKILQDAASETALYQRKVAREEAAKALDELKKRGMQVHELPAAE
VAKLRERAKPAMDKLTAQVGEPLVKEVMAEVEKVRAASK
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory