Comparing WP_029134073.1 NCBI__GCF_000428045.1:WP_029134073.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 5 hits to proteins with known functional sites (download)
P22106 Asparagine synthetase B [glutamine-hydrolyzing]; AS-B; EC 6.3.5.4 from Escherichia coli (strain K12) (see 2 papers)
28% identity, 62% coverage: 1:387/625 of query aligns to 1:358/554 of P22106
1ct9A Crystal structure of asparagine synthetase b from escherichia coli (see paper)
28% identity, 62% coverage: 3:387/625 of query aligns to 5:341/497 of 1ct9A
Sites not aligning to the query:
6gq3A Human asparagine synthetase (asns) in complex with 6-diazo-5-oxo-l- norleucine (don) at 1.85 a resolution (see paper)
26% identity, 58% coverage: 28:387/625 of query aligns to 25:361/509 of 6gq3A
Sites not aligning to the query:
P08243 Asparagine synthetase [glutamine-hydrolyzing]; Cell cycle control protein TS11; Glutamine-dependent asparagine synthetase; EC 6.3.5.4 from Homo sapiens (Human) (see 7 papers)
25% identity, 62% coverage: 1:387/625 of query aligns to 1:374/561 of P08243
Sites not aligning to the query:
P78753 Probable asparagine synthetase [glutamine-hydrolyzing]; Glutamine-dependent asparagine synthetase; EC 6.3.5.4 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
26% identity, 62% coverage: 1:387/625 of query aligns to 1:365/557 of P78753
Sites not aligning to the query:
>WP_029134073.1 NCBI__GCF_000428045.1:WP_029134073.1
MCGFFQVIQKTVPISREKFTAALNTLHHRGPDDQGVHYLDFNTPTADGEVVCHAAFGHQR
LSILDLSDRSHQPFLSQDKVFLYNGELYNYRQIGAELKKQGVDFRTTGDTEVFLRSVVSG
GAGALADFNGMWAFSLFDAGRNALFLSRDRYGKKPLFYYLDDEVLCVSSSIGAIKTYLGL
NLEFRRSALLDYFLFGSMHPSASAETHFQKISQILPGHYCTFDFSRWEMTGAPYFDWHHP
PAGSTGDYQQQDLVEVLRDSVASRLVSDRPVALLLSGGIDSSLLLSVLYSEKLQDQVKIF
MGDTGRSDDYKYAQKCVQELGVAAETVVLDYDSNSFEQFLQVCRHHEKAFPFNGNAMAMP
QMYEAIAQQGIPVVLDGTGGDELFGGYWGRQFQAAVRDAMRRRDWAWIKQSYACDGKVNN
VRRHIRDAFWPARYLNAKQSLKTRVSAQLHPLLNIPAPEIWSAKNPDPLNDLGLGFTDVL
CNDIAPGGRLGEWIWHNDRNAMMASVENRSPLLDMRLHPFVFSGYRKKYADCWNKHELRK
AFDALQPLPTQWRSQKQGFRWDGKHFINNNRTRIMELIEATECLSDVVNTKRLLSLARKY
PNILRSSLGKRTLCIAGLEQSLIKN
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory