Comparing WP_029134121.1 NCBI__GCF_000428045.1:WP_029134121.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P11180 Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex; Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; Pyruvate dehydrogenase complex component E2; PDC-E2; PDCE2; EC 2.3.1.12 from Bos taurus (Bovine) (see paper)
44% identity, 100% coverage: 3:423/423 of query aligns to 219:647/647 of P11180
Sites not aligning to the query:
P10515 Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial; 70 kDa mitochondrial autoantigen of primary biliary cirrhosis; PBC; Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; M2 antigen complex 70 kDa subunit; Pyruvate dehydrogenase complex component E2; PDC-E2; PDCE2; EC 2.3.1.12 from Homo sapiens (Human) (see 4 papers)
44% identity, 100% coverage: 3:423/423 of query aligns to 219:647/647 of P10515
Sites not aligning to the query:
O00330 Pyruvate dehydrogenase protein X component, mitochondrial; Dihydrolipoamide dehydrogenase-binding protein of pyruvate dehydrogenase complex; E3-binding protein; E3BP; Lipoyl-containing pyruvate dehydrogenase complex component X; proX from Homo sapiens (Human) (see 5 papers)
36% identity, 99% coverage: 2:421/423 of query aligns to 56:500/501 of O00330
Sites not aligning to the query:
A0A0D2Y5A7 Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial; FoDLAT; DLAT; EC 2.3.1.12 from Fusarium oxysporum f. sp. lycopersici (strain 4287 / CBS 123668 / FGSC 9935 / NRRL 34936) (Fusarium vascular wilt of tomato) (see paper)
38% identity, 99% coverage: 5:423/423 of query aligns to 39:457/457 of A0A0D2Y5A7
G0S4X6 Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial; Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; MRP3; Pyruvate dehydrogenase complex component E2; PDC-E2; PDCE2; EC 2.3.1.12 from Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) (Thermochaetoides thermophila) (see paper)
37% identity, 99% coverage: 5:423/423 of query aligns to 37:459/459 of G0S4X6
P21883 Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex; Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; E2; S complex, 48 kDa subunit; EC 2.3.1.12 from Bacillus subtilis (strain 168) (see paper)
33% identity, 100% coverage: 1:423/423 of query aligns to 1:440/442 of P21883
P11961 Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex; Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; E2; EC 2.3.1.12 from Geobacillus stearothermophilus (Bacillus stearothermophilus) (see 2 papers)
33% identity, 100% coverage: 1:423/423 of query aligns to 1:426/428 of P11961
P0AFG6 Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex; 2-oxoglutarate dehydrogenase complex component E2; OGDC-E2; Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex; EC 2.3.1.61 from Escherichia coli (strain K12) (see 3 papers)
30% identity, 100% coverage: 3:423/423 of query aligns to 4:403/405 of P0AFG6
Sites not aligning to the query:
P06959 Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex; Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; E2; EC 2.3.1.12 from Escherichia coli (strain K12) (see 6 papers)
28% identity, 98% coverage: 4:417/423 of query aligns to 208:624/630 of P06959
Sites not aligning to the query:
P11181 Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial; Branched-chain alpha-keto acid dehydrogenase complex component E2; BCKAD-E2; BCKADE2; Dihydrolipoamide acetyltransferase component of branched-chain alpha-keto acid dehydrogenase complex; Dihydrolipoamide branched chain transacylase; Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase; EC 2.3.1.168 from Bos taurus (Bovine) (see 2 papers)
29% identity, 100% coverage: 3:423/423 of query aligns to 65:479/482 of P11181
P11182 Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial; 52 kDa mitochondrial autoantigen of primary biliary cirrhosis; Branched chain 2-oxo-acid dehydrogenase complex component E2; BCOADC-E2; Branched-chain alpha-keto acid dehydrogenase complex component E2; BCKAD-E2; BCKADE2; BCKDH-E2; Dihydrolipoamide acetyltransferase component of branched-chain alpha-keto acid dehydrogenase complex; Dihydrolipoamide branched chain transacylase; Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase; EC 2.3.1.168 from Homo sapiens (Human) (see 7 papers)
29% identity, 100% coverage: 3:423/423 of query aligns to 65:479/482 of P11182
P11179 Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial; 2-oxoglutarate dehydrogenase complex component E2; OGDC-E2; Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex; E2K; EC 2.3.1.61 from Bos taurus (Bovine) (see paper)
34% identity, 52% coverage: 203:423/423 of query aligns to 232:453/455 of P11179
Sites not aligning to the query:
Q8NNJ2 Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex; Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; Pyruvate dehydrogenase complex component E2; PDH component E2; EC 2.3.1.12 from Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / BCRC 11384 / CCUG 27702 / LMG 3730 / NBRC 12168 / NCIMB 10025 / NRRL B-2784 / 534) (see paper)
30% identity, 68% coverage: 131:416/423 of query aligns to 372:665/675 of Q8NNJ2
Sites not aligning to the query:
Q9N0F1 Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial; 2-oxoglutarate dehydrogenase complex component E2; OGDC-E2; Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex; E2K; E2o; PE2o; EC 2.3.1.61 from Sus scrofa (Pig) (see paper)
33% identity, 52% coverage: 203:423/423 of query aligns to 232:453/455 of Q9N0F1
P36957 Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial; 2-oxoglutarate dehydrogenase complex component E2; OGDC-E2; Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex; E2K; EC 2.3.1.61 from Homo sapiens (Human) (see 5 papers)
33% identity, 52% coverage: 203:423/423 of query aligns to 230:451/453 of P36957
Sites not aligning to the query:
2ii5A Crystal structure of a cubic core of the dihydrolipoamide acyltransferase (e2b) component in the branched-chain alpha-ketoacid dehydrogenase complex (bckdc), isobutyryl-coenzyme a-bound form (see paper)
33% identity, 53% coverage: 199:423/423 of query aligns to 7:231/234 of 2ii5A
2ii4A Crystal structure of a cubic core of the dihydrolipoamide acyltransferase (e2b) component in the branched-chain alpha-ketoacid dehydrogenase complex (bckdc), coenzyme a-bound form (see paper)
33% identity, 53% coverage: 199:423/423 of query aligns to 7:231/234 of 2ii4A
2ii3A Crystal structure of a cubic core of the dihydrolipoamide acyltransferase (e2b) component in the branched-chain alpha-ketoacid dehydrogenase complex (bckdc), oxidized coenzyme a-bound form (see paper)
33% identity, 53% coverage: 199:423/423 of query aligns to 7:231/234 of 2ii3A
1eafA Atomic structure of the cubic core of the pyruvate dehydrogenase multienzyme complex (see paper)
35% identity, 53% coverage: 198:423/423 of query aligns to 18:243/243 of 1eafA
6zzmB Crystal structure of the catalytic domain of corynebacterium mustelae predicted acetyltransferase acef (e2p). (see paper)
38% identity, 39% coverage: 250:416/423 of query aligns to 56:228/238 of 6zzmB
Sites not aligning to the query:
>WP_029134121.1 NCBI__GCF_000428045.1:WP_029134121.1
MPIEIMLPALTADMTETRIDNWLVSEGSKVNKGDVLLEVETDKAVVEVESEYSGKLGKIL
IGNGEIAKVDQCIAVLLEDGESNADIDQILVGNKCEASVEIEKVSHAIPTTVAQKSALAT
NSSSNRNKRIFASPLARRIAQEHGIDLLSISGTGPHNRIVKNDIVSAITHQSQTILSKGE
VVTTASAQTDDIPNYDVIPNSGMRKVIAKRLGDSKRDIPHFYLTVDLELDALLALRQELN
DRTSRVTNPIKLSVNDLIIKASALALRDVPDANSSWSEDAILRYHDVDIAIAVATESGLI
TPIIRNADQKGLGTISKEMKALAEKARNGKLQPHEYQGGGFTISNLGMFGIKSFSAIVNP
PQSCILAVGAGEQRAVVRDGELVVATAMTCTLSVDHRSVDGAIGAHFLKAFKDYIEDPMA
MML
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory