SitesBLAST

SitesBLAST – Find functional sites

SitesBLAST

Comparing WP_029601770.1 NCBI__GCF_000336675.1:WP_029601770.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

2gtvX Nmr structure of monomeric chorismate mutase from methanococcus jannaschii (see paper)
32% identity, 83% coverage: 16:99/101 of query aligns to 5:96/104 of 2gtvX

query
sites
2gtvX

L

L

D

A

E

E

L

I

R
|
R

E

K

E

K

I

I

E

D

T

E

I

I

D

D

R

N

E

K

I

I

V

L

E

K

H

A

-

R

-

W

-

P

-

W

-

A

-

E

-

K

-

L

I

I

A

A

Q

E

R
|
R

T

N

Y

S

V

L

A

A

E

K

T

D

I
x
V

A

A

N

E

V

I

K
|
K

R

N

D

Q

Q

L

G

G

L

I

P

P

T

I

T

N

D
|
D

E

P

S

E

Q
x
R

E
|
E

Q

K

R

Y

V

I

M

Y

D

D

R

R

A

I

G

R

E

K

N

L

A

C

Q

K

R

E

F

H

D

N

V

V

D

D

D

E

N

N

L

I

V

G

K

I

A

K

M

I

F

F

R

Q

L

R

L

L

I

I

E

E

L

H

N
|
N

K

K

V

A

E

L

Q
|
Q

R

K

E

Q

binding 8-hydroxy-2-oxa-bicyclo[3.3.1]non-6-ene-3,5-dicarboxylic acid: R9 (= R20), R34 (= R37), V41 (≠ I44), K45 (= K48), D54 (= D57), R57 (≠ Q60), E58 (= E61), N90 (= N93), Q94 (= Q97)

Query Sequence

>WP_029601770.1 NCBI__GCF_000336675.1:WP_029601770.1
MADDDTDRRRTDGMNLDELREEIETIDREIVEHIAQRTYVAETIANVKRDQGLPTTDESQ
EQRVMDRAGENAQRFDVDDNLVKAMFRLLIELNKVEQRESR

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory