SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_029936328.1 NCBI__GCF_000711195.1:WP_029936328.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

6j2lA Crystal structure of bi-functional enzyme (see paper)
49% identity, 94% coverage: 4:50/50 of query aligns to 113:159/200 of 6j2lA

query
sites
6j2lA
I
 
F
L
 
L
T
 
Y
Q
 
Q
L
 
L
D
 
E
Q
 
Q
L
 
L
L
 
L
E
 
A
T
 
E
R
 
R
K
 
K
S
 
Y
E
 
A
S
 
D
A
 
P
D
 
E
S
 
T
S
 
S
Y
 
Y
V
 
T
A
 
A
S
 
K
L
 
L
Y
 
Y
A
 
A
K
 
S
G
 
G
L
 
T
D
 
K
Q
 
R
I
 
I
L
 
A
K
 
Q
K
 
K
L
 
V
G
 
G
E
 
E
E
|
E
A
 
G
I
 
V
E
 
E
T
 
T
V
 
A
M
 
L
A
 
A

Sites not aligning to the query:

Query Sequence

>WP_029936328.1 NCBI__GCF_000711195.1:WP_029936328.1
MSEILTQLDQLLETRKSESADSSYVASLYAKGLDQILKKLGEEAIETVMA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory