SitesBLAST
Comparing WP_034993564.1 NCBI__GCF_000745425.1:WP_034993564.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P12995 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; 7,8-diamino-pelargonic acid aminotransferase; DAPA AT; DAPA aminotransferase; 7,8-diaminononanoate synthase; DANS; Diaminopelargonic acid synthase; EC 2.6.1.62 from Escherichia coli (strain K12) (see 4 papers)
51% identity, 97% coverage: 1:412/425 of query aligns to 1:417/429 of P12995
- Y17 (= Y17) mutation to F: Severely reduces the aminotransferase activity.
- W52 (= W52) binding substrate
- GS 112:113 (= GS 112:113) binding pyridoxal 5'-phosphate
- Y144 (= Y145) mutation to F: Severely reduces the aminotransferase activity.
- D147 (= D148) mutation to N: Loss of aminotransferase activity.
- D245 (= D239) binding pyridoxal 5'-phosphate
- R253 (= R247) mutation to A: Has only a small effect on the rate of reaction with DAPA.; mutation to K: Increases aminotransferase activity toward SAM.; mutation to M: Loss of aminotransferase activity.; mutation to Q: Increases aminotransferase activity toward SAM.
- K274 (= K268) binding substrate; modified: N6-(pyridoxal phosphate)lysine
- G307 (= G302) binding substrate
- PT 308:309 (= PT 303:304) binding pyridoxal 5'-phosphate
- R391 (= R386) binding substrate; mutation to A: Reduces aminotransferase activity.
6ed7A Crystal structure of 7,8-diaminopelargonic acid synthase bound to inhibitor mac13772
51% identity, 94% coverage: 12:412/425 of query aligns to 12:417/429 of 6ed7A
- active site: Y17 (= Y17), Y144 (= Y145), D245 (= D239), K274 (= K268)
- binding 2-[(2-nitrophenyl)sulfanyl]acetohydrazide: Y17 (= Y17), W52 (= W52), W52 (= W52), Y144 (= Y145), D147 (= D148), A217 (= A211), K274 (= K268), R391 (= R386), F393 (= F388), F393 (= F388)
- binding pyridoxal-5'-phosphate: G112 (= G112), S113 (= S113), Y144 (= Y145), H145 (= H146), D245 (= D239), I247 (= I241), K274 (= K268)
1dtyA Crystal structure of adenosylmethionine-8-amino-7-oxonanoate aminotransferase with pyridoxal phosphate cofactor.
51% identity, 97% coverage: 1:412/425 of query aligns to 1:417/429 of 1dtyA
- active site: Y17 (= Y17), Y144 (= Y145), E211 (= E205), D245 (= D239), A248 (≠ F242), K274 (= K268), Y398 (= Y393)
- binding pyridoxal-5'-phosphate: G112 (= G112), S113 (= S113), Y144 (= Y145), H145 (= H146), D245 (= D239), I247 (= I241), K274 (= K268)
1mlzA Crystal structure of 7,8-diaminopelargonic acid synthase in complex with the trans-isomer of amiclenomycin. (see paper)
51% identity, 97% coverage: 1:412/425 of query aligns to 1:416/427 of 1mlzA
- active site: Y17 (= Y17), Y144 (= Y145), E210 (= E205), D244 (= D239), A247 (≠ F242), K273 (= K268), Y397 (= Y393)
- binding pyridoxal-5'-phosphate: G112 (= G112), S113 (= S113), Y144 (= Y145), H145 (= H146), D244 (= D239), I246 (= I241), K273 (= K268), P307 (= P303), T308 (= T304)
- binding trans-amiclenomycin: W52 (= W52), W53 (= W53), Y144 (= Y145), K273 (= K268), R390 (= R386), F392 (= F388)
1mlyA Crystal structure of 7,8-diaminopelargonic acid synthase in complex with the cis isomer of amiclenomycin (see paper)
51% identity, 97% coverage: 1:412/425 of query aligns to 1:416/427 of 1mlyA
- active site: Y17 (= Y17), Y144 (= Y145), E210 (= E205), D244 (= D239), A247 (≠ F242), K273 (= K268), Y397 (= Y393)
- binding cis-amiclenomycin: W52 (= W52), W53 (= W53), K273 (= K268), R390 (= R386), F392 (= F388)
- binding pyridoxal-5'-phosphate: G112 (= G112), S113 (= S113), Y144 (= Y145), H145 (= H146), D244 (= D239), I246 (= I241), K273 (= K268), P307 (= P303), T308 (= T304)
4cxqA Mycobaterium tuberculosis transaminase bioa complexed with substrate kapa (see paper)
50% identity, 96% coverage: 11:417/425 of query aligns to 12:423/427 of 4cxqA
- active site: Y18 (= Y17), Y149 (= Y145), E212 (= E205), D246 (= D239), A249 (≠ F242), K275 (= K268), Y399 (= Y393)
- binding 7-keto-8-aminopelargonic acid: W56 (= W52), Y149 (= Y145), G308 (= G302), T310 (= T304), R392 (= R386)
- binding pyridoxal-5'-phosphate: G116 (= G112), S117 (= S113), Y149 (= Y145), H150 (= H146), G151 (= G147), E212 (= E205), D246 (= D239), I248 (= I241), K275 (= K268), P309 (= P303), T310 (= T304)
1qj3A Crystal structure of 7,8-diaminopelargonic acid synthase in complex with 7-keto-8-aminopelargonic acid (see paper)
51% identity, 97% coverage: 1:412/425 of query aligns to 1:405/416 of 1qj3A
- active site: Y17 (= Y17), Y144 (= Y145), E201 (= E205), D235 (= D239), A238 (≠ F242), K264 (= K268), Y386 (= Y393)
- binding 7-keto-8-aminopelargonic acid: Y17 (= Y17), W52 (= W52), Y144 (= Y145), K264 (= K268), R379 (= R386), F381 (= F388)
- binding pyridoxal-5'-phosphate: G112 (= G112), S113 (= S113), Y144 (= Y145), H145 (= H146), G146 (= G147), D235 (= D239), I237 (= I241), A238 (≠ F242), K264 (= K268)
4w1vA Crystal structure of 7,8-diaminopelargonic acid synthase (bioa) from mycobacterium tuberculosis, complexed with a thiazole inhibitor (see paper)
50% identity, 96% coverage: 11:417/425 of query aligns to 12:421/425 of 4w1vA
- active site: Y18 (= Y17), Y147 (= Y145), E210 (= E205), D244 (= D239), A247 (≠ F242), K273 (= K268), Y397 (= Y393)
- binding dimethyl (2R)-5-(3-fluorophenyl)-1H-pyrrolo[1,2-c][1,3]thiazole-6,7-dicarboxylate 2-oxide: P17 (= P16), Y18 (= Y17), W54 (= W52), M81 (= M79), G83 (= G81), Y147 (= Y145), G306 (= G302), P307 (= P303), T308 (= T304), F392 (= F388)
- binding pyridoxal-5'-phosphate: G114 (= G112), S115 (= S113), Y147 (= Y145), H148 (= H146), E210 (= E205), D244 (= D239), I246 (= I241), K273 (= K268)
4cxrA Mycobaterium tuberculosis transaminase bioa complexed with 1-(1,3- benzothiazol-2-yl)methanamine (see paper)
50% identity, 96% coverage: 11:417/425 of query aligns to 12:421/425 of 4cxrA
- active site: Y18 (= Y17), Y147 (= Y145), E210 (= E205), D244 (= D239), A247 (≠ F242), K273 (= K268), Y397 (= Y393)
- binding 1-(1,3-benzothiazol-2-yl)methanamine: Y18 (= Y17), W54 (= W52), W55 (= W53), A216 (= A211)
- binding pyridoxal-5'-phosphate: G114 (= G112), S115 (= S113), Y147 (= Y145), H148 (= H146), E210 (= E205), D244 (= D239), I246 (= I241), K273 (= K268), P307 (= P303), T308 (= T304)
6erkA Crystal structure of diaminopelargonic acid aminotransferase from psychrobacter cryohalolentis (see paper)
45% identity, 96% coverage: 12:417/425 of query aligns to 13:414/420 of 6erkA
5te2A Crystal structure of 7,8-diaminopelargonic acid synthase (bioa) from mycobacterium tuberculosis, complexed with a mechanism-based inhibitor (see paper)
50% identity, 96% coverage: 11:417/425 of query aligns to 12:424/428 of 5te2A