SitesBLAST
Comparing WP_035236530.1 NCBI__GCF_000745975.1:WP_035236530.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
3dc2A Crystal structure of serine bound d-3-phosphoglycerate dehydrogenase from mycobacterium tuberculosis (see paper)
39% identity, 96% coverage: 3:509/527 of query aligns to 4:507/526 of 3dc2A
- active site: N96 (= N97), R230 (= R231), D254 (= D255), E259 (= E260), H277 (= H279)
- binding serine: Y458 (≠ N460), D460 (= D462), R461 (≠ K463), P462 (= P464), G463 (= G465), A464 (≠ S466), L465 (≠ I467), L484 (≠ V486)
3ddnB Crystal structure of hydroxypyruvic acid phosphate bound d-3- phosphoglycerate dehydrogenase in mycobacterium tuberculosis (see paper)
39% identity, 96% coverage: 3:509/527 of query aligns to 5:506/525 of 3ddnB
O43175 D-3-phosphoglycerate dehydrogenase; 3-PGDH; 2-oxoglutarate reductase; Malate dehydrogenase; EC 1.1.1.95; EC 1.1.1.399; EC 1.1.1.37 from Homo sapiens (Human) (see 3 papers)
42% identity, 77% coverage: 2:407/527 of query aligns to 8:412/533 of O43175
- T78 (≠ I73) binding NAD(+)
- R135 (≠ K130) to W: in PHGDHD; results in a 2-fold decrease in enzyme activity with 3-phosphohydroxypyruvate, but no change in substrate affinity; dbSNP:rs267606949
- RI 155:156 (≠ NI 150:151) binding NAD(+)
- D175 (= D170) binding NAD(+)
- T207 (≠ V202) binding NAD(+)
- CAR 234:236 (= CAR 229:231) binding NAD(+)
- D260 (= D255) binding NAD(+)
- V261 (= V256) to M: in PHGDHD; results in a four-fold decrease in substrate affinity and a slight increase in maximal enzyme activity with 3-phosphohydroxypyruvate; dbSNP:rs267606947
- HLGA 283:286 (= HLGA 279:282) binding NAD(+)
- A373 (≠ L366) to T: in PHGDHD; results in almost undetectable enzyme activity with 3-phosphohydroxypyruvate; dbSNP:rs201553627
- G377 (= G373) to S: in PHGDHD; results in a 2-fold decrease in enzyme activity with 3-phosphohydroxypyruvate, but no change in substrate affinity; dbSNP:rs267606948
Sites not aligning to the query:
- 1 modified: Initiator methionine, Removed
- 2 modified: N-acetylalanine
- 425 V → M: in PHGDHD; results in almost undetectable enzyme activity with 3-phosphohydroxypyruvate; dbSNP:rs121907988
- 490 V → M: in PHGDHD; results in almost undetectable enzyme activity with 3-phosphohydroxypyruvate; dbSNP:rs121907987
7dkmA Phgdh covalently linked to oridonin (see paper)
47% identity, 57% coverage: 2:300/527 of query aligns to 4:300/306 of 7dkmA
- binding nicotinamide-adenine-dinucleotide: T74 (≠ I73), A102 (≠ T101), G148 (= G147), R151 (≠ N150), I152 (= I151), Y170 (= Y169), D171 (= D170), P172 (= P171), I173 (≠ N172), H202 (= H201), T203 (≠ V202), P204 (= P203), T209 (= T208), C230 (= C229), A231 (= A230), R232 (= R231), H279 (= H279), G281 (= G281)
- binding (1beta,6beta,7beta,8alpha,9beta,10alpha,13alpha,14R,16beta)-1,6,7,14-tetrahydroxy-7,20-epoxykauran-15-one: C14 (≠ A12), K17 (≠ N15), I18 (= I16), E293 (≠ V293)
6rj5A Crystal structure of phgdh in complex with compound 39 (see paper)
47% identity, 57% coverage: 2:300/527 of query aligns to 3:299/301 of 6rj5A
6cwaA Crystal structure phgdh in complex with nadh and 3-phosphoglycerate at 1.77 a resolution (see paper)
47% identity, 57% coverage: 2:300/527 of query aligns to 2:298/299 of 6cwaA
- binding 1,4-dihydronicotinamide adenine dinucleotide: N96 (= N97), A100 (≠ T101), R149 (≠ N150), I150 (= I151), Y168 (= Y169), D169 (= D170), P170 (= P171), I171 (≠ N172), H200 (= H201), T201 (≠ V202), P202 (= P203), T207 (= T208), C228 (= C229), A229 (= A230), R230 (= R231), H277 (= H279), G279 (= G281)
7ewhA Crystal structure of human phgdh in complex with homoharringtonine (see paper)
47% identity, 57% coverage: 2:300/527 of query aligns to 3:299/302 of 7ewhA
- binding (3beta)-O~3~-[(2R)-2,6-dihydroxy-2-(2-methoxy-2-oxoethyl)-6-methylheptanoyl]cephalotaxine: L146 (≠ V146), G147 (= G147), L148 (≠ F148), G149 (= G149), R150 (≠ N150), I151 (= I151), G152 (= G152), D170 (= D170), H201 (= H201), T202 (≠ V202), P203 (= P203)
6rihA Crystal structure of phgdh in complex with compound 9 (see paper)
47% identity, 57% coverage: 2:300/527 of query aligns to 3:299/302 of 6rihA
6plgA Crystal structure of human phgdh complexed with compound 15 (see paper)
47% identity, 57% coverage: 2:300/527 of query aligns to 3:299/303 of 6plgA
6plfA Crystal structure of human phgdh complexed with compound 1 (see paper)
47% identity, 57% coverage: 2:300/527 of query aligns to 4:300/305 of 6plfA
6rj3A Crystal structure of phgdh in complex with compound 15 (see paper)
48% identity, 55% coverage: 2:291/527 of query aligns to 2:289/297 of 6rj3A
6rj2A Crystal structure of phgdh in complex with compound 40 (see paper)
47% identity, 57% coverage: 3:300/527 of query aligns to 1:296/299 of 6rj2A
- binding ~{N}-[(1~{R})-1-[4-(ethanoylsulfamoyl)phenyl]ethyl]-2-methyl-5-phenyl-pyrazole-3-carboxamide: G146 (= G149), I148 (= I151), Y166 (= Y169), D167 (= D170), P168 (= P171), I169 (≠ N172), I170 (= I173), H198 (= H201), T199 (≠ V202), L208 (= L211), R228 (= R231)
6plfB Crystal structure of human phgdh complexed with compound 1 (see paper)
46% identity, 57% coverage: 2:300/527 of query aligns to 2:290/292 of 6plfB
- binding 4-{(1S)-1-[(5-chloro-6-{[(5S)-2-oxo-1,3-oxazolidin-5-yl]methoxy}-1H-indole-2-carbonyl)amino]-2-hydroxyethyl}benzoic acid: R141 (≠ N150), Y160 (= Y169), D161 (= D170), P162 (= P171), I164 (= I173), L179 (= L188), T193 (≠ V202), P194 (= P203), S198 (≠ A207), L202 (= L211)
2eklA Structure of st1218 protein from sulfolobus tokodaii
43% identity, 55% coverage: 1:292/527 of query aligns to 5:295/312 of 2eklA
- active site: S100 (≠ N97), R232 (= R231), D256 (= D255), E261 (= E260), H282 (= H279)
- binding nicotinamide-adenine-dinucleotide: I76 (= I73), S100 (≠ N97), G148 (= G147), G150 (= G149), R151 (≠ N150), I152 (= I151), Y170 (= Y169), D171 (= D170), I172 (≠ P171), L173 (≠ N172), H202 (= H201), V203 (= V202), T204 (≠ P203), I212 (≠ L211), T230 (≠ C229), S231 (≠ A230), D256 (= D255), G284 (= G281)
1wwkA Crystal structure of phosphoglycerate dehydrogenase from pyrococcus horikoshii ot3
39% identity, 57% coverage: 1:303/527 of query aligns to 1:302/304 of 1wwkA
- active site: S96 (≠ N97), R230 (= R231), D254 (= D255), E259 (= E260), H278 (= H279)
- binding nicotinamide-adenine-dinucleotide: V100 (≠ T101), G146 (= G147), F147 (= F148), G148 (= G149), R149 (≠ N150), I150 (= I151), Y168 (= Y169), D169 (= D170), P170 (= P171), V201 (= V202), P202 (= P203), T207 (= T208), T228 (≠ C229), S229 (≠ A230), D254 (= D255), H278 (= H279), G280 (= G281)
7cvpA The crystal structure of human phgdh from biortus.
46% identity, 42% coverage: 79:300/527 of query aligns to 33:253/254 of 7cvpA
- binding nicotinamide-adenine-dinucleotide: G101 (= G147), G103 (= G149), R104 (≠ N150), I105 (= I151), Y123 (= Y169), D124 (= D170), P125 (= P171), I126 (≠ N172), H155 (= H201), T156 (≠ V202), P157 (= P203), T162 (= T208), C183 (= C229), A184 (= A230), R185 (= R231), H232 (= H279), G234 (= G281)
8pinC Crystal structure of ser33
34% identity, 60% coverage: 1:318/527 of query aligns to 9:336/419 of 8pinC
- binding nicotinamide-adenine-dinucleotide: F103 (≠ G95), N105 (= N97), V109 (≠ T101), G155 (= G147), G157 (= G149), H158 (≠ N150), I159 (= I151), D178 (= D170), I179 (= I173), H207 (= H201), V208 (= V202), P209 (= P203), T214 (= T208), M217 (≠ L211), A235 (≠ C229), R237 (= R231), G299 (= G281)
- binding : W144 (≠ R136), D228 (≠ T222), G229 (= G223)
8pioA Crystal structure of ser33 in complex with php (3- phosphohydroxypyruvate)
34% identity, 60% coverage: 1:318/527 of query aligns to 33:360/443 of 8pioA
- binding 2-oxo-3-(phosphonooxy)propanoic acid: R81 (= R49), S82 (= S50)
- binding nicotinamide-adenine-dinucleotide: F127 (≠ G95), V133 (≠ T101), G181 (= G149), H182 (≠ N150), I183 (= I151), D202 (= D170), I203 (= I173), H231 (= H201), V232 (= V202), P233 (= P203), T238 (= T208), A259 (≠ C229), S260 (≠ A230), R261 (= R231), H321 (= H279), G323 (= G281)
8q2iA Crystal structure of ser33 in complex 2hg (2-hydroxyglutarate) and serine
34% identity, 60% coverage: 1:318/527 of query aligns to 13:340/419 of 8q2iA
- binding (2R)-2-hydroxypentanedioic acid: S62 (= S50), C84 (≠ G72), I85 (= I73)
- binding nicotinamide-adenine-dinucleotide: V113 (≠ T101), G161 (= G149), H162 (≠ N150), I163 (= I151), Y181 (= Y169), D182 (= D170), I183 (= I173), H211 (= H201), V212 (= V202), P213 (= P203), T218 (= T208), A239 (≠ C229), R241 (= R231), H301 (= H279)
Sites not aligning to the query:
8q2iB Crystal structure of ser33 in complex 2hg (2-hydroxyglutarate) and serine
34% identity, 60% coverage: 1:318/527 of query aligns to 37:364/447 of 8q2iB
- binding nicotinamide-adenine-dinucleotide: V137 (≠ T101), G185 (= G149), H186 (≠ N150), I187 (= I151), Y205 (= Y169), D206 (= D170), I207 (= I173), H235 (= H201), V236 (= V202), P237 (= P203), A263 (≠ C229), R265 (= R231), H325 (= H279)
Sites not aligning to the query:
Query Sequence
>WP_035236530.1 NCBI__GCF_000745975.1:WP_035236530.1
MKVLISDKMDEAGINIFRNQEGIDVDVNTGLSPEELKKIIGQYDALAIRSSTKVTADLLE
AAGNLKVIARAGIGLDNVDIDAATKKGVAVMNTPGGNTVTTAEHAMAMMMALTRNIPRGT
ASLKAGRWDKKLLQGREIFNKTLGVVGFGNIGSIVAGLAKGMRMNVIVYDPNISSEHIEK
AGFEYVSLDELYARSDYITIHVPKMDATIDLLDAQAFEKMKTGVMVINCARGGIVNEAAL
HEAIQSGKVAGAALDVFSTEPPGGDHPLLLLDQVIATPHLGASTKEAQTNVSVAAANQII
AYLLHDTVINAVNVPSVTGEVLRQLKPFLYLVEKMGKMQAQITKGGVREVNIEYIGKFPD
LDLKPLTINGIKGLLNEYVRDEVNSVNAISLANEMGIKITESTAQEAGNFLNLVRMIVVT
DTQTNILEGTIFGKDDARIVRINKFRLEVIPEGHLGIIHNVDKPGSIGSIGQKLGEHNIN
IARMMVGREDDGDRNIIFLRTETPVPPDVVKEIEDLELVVSMTTFEL
Or try a new SitesBLAST search
SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory