SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_035237317.1 NCBI__GCF_000745975.1:WP_035237317.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

P94530 Arabinooligosaccharides transport system permease protein AraQ from Bacillus subtilis (strain 168) (see paper)
28% identity, 61% coverage: 25:182/260 of query aligns to 57:199/281 of P94530

query
sites
P94530
V
 
V
N
 
M
A
 
S
F
 
F
N
 
D
L
 
N
N
 
Y
K
 
T
Y
 
F
G
 
L
M
 
F
K
 
N
W
 
G
G
 
G
G
 
S
F
 
I
T
 
Y
F
 
F
K
 
K
W
 
W
F
 
F
T
 
F
A
 
-
M
 
-
L
 
-
G
 
-
N
 
-
H
 
-
S
 
-
L
 
-
M
 
-
E
 
-
A
 
-
A
 
-
R
 
-
H
 
N
S
 
S
V
 
L
V
 
V
I
 
L
A
 
G
V
 
L
C
 
F
A
 
T
A
 
T
S
 
V
L
 
L
A
 
T
T
 
L
M
 
F
I
 
F
G
 
S
A
 
S
L
 
M
A
 
I
A
 
G
I
 
Y
G
 
G
L
 
L
N
 
A
R
 
V
Y
 
Y
R
 
D
F
 
F
F
 
K
G
 
G
R
 
R
K
 
N
V
 
I
I
 
I
Q
 
F
G
 
V
T
 
L
S
 
V
M
 
L
T
 
I
L
 
I
M
 
M
M
 
M
A
 
V
P
 
P
D
 
-
I
 
-
I
 
-
L
 
L
A
 
E
I
 
V
A
 
M
F
 
M
L
 
L
V
 
P
L
 
L
F
 
F
V
 
-
T
 
K
L
 
L
G
 
T
I
 
V
G
 
G
L
 
L
G
 
-
F
 
-
W
 
-
S
 
H
L
 
L
L
 
I
F
 
D
S
 
S
H
 
Y
I
 
T
T
 
G
F
 
V
C
 
I
L
 
L
P
 
P
F
 
F
-
 
I
-
 
V
-
 
S
-
 
P
-
 
V
A
 
A
I
 
V
M
 
F
T
 
F
I
 
F
T
 
R
G
 
Q
R
 
Y
L
 
A
Q
 
L
D
 
G
F
 
L
D
 
P
P
 
R
N
 
D
I
 
L
L
 
L
D
 
D
A
 
S
A
 
A
R
 
R
D
 
M
L
x
D
G
 
G
A
 
C
S
 
T
E
 
E
K
 
F
N
 
G
I
 
I
L
 
F
A
 
F
R
 
R
V
 
I
I
 
M
L
 
A
P
 
P
M
 
L
M
 
M
R
 
K
P
 
P
A
 
A

Query Sequence

>WP_035237317.1 NCBI__GCF_000745975.1:WP_035237317.1
MNILRLFYFAGIFFYLYLPISVLVVNAFNLNKYGMKWGGFTFKWFTAMLGNHSLMEAARH
SVVIAVCAASLATMIGALAAIGLNRYRFFGRKVIQGTSMTLMMAPDIILAIAFLVLFVTL
GIGLGFWSLLFSHITFCLPFAIMTITGRLQDFDPNILDAARDLGASEKNILARVILPMMR
PALISSWLLAFTLSLDDVIISSFVTGPSYDVLPLKIFSMVKVGVKPEVNALAALLVLLSL
ALVIVSQLMLKEKKNHENTI

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory