SitesBLAST

SitesBLAST – Find functional sites

SitesBLAST

Comparing WP_035587918.1 NCBI__GCF_000744435.1:WP_035587918.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 20 (the maximum) hits to proteins with known functional sites (download)

P0AAH0 Phosphate import ATP-binding protein PstB; ABC phosphate transporter; Phosphate-transporting ATPase; EC 7.3.2.1 from Escherichia coli (strain K12) (see paper)
62% identity, 98% coverage: 7:252/252 of query aligns to 11:257/257 of P0AAH0

query
sites
P0AAH0

I

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Q

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F

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Y

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G

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D

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A

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K

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A

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G

P

P

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G

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F

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G

G48 (= G44) mutation to I: Loss of phosphate transport.
K49 (= K45) mutation to Q: Loss of phosphate transport.

Sites not aligning to the query:

1 modified: Initiator methionine, Removed

3c4jA Abc protein artp in complex with atp-gamma-s
39% identity, 98% coverage: 6:251/252 of query aligns to 3:242/242 of 3c4jA

query
sites
3c4jA

L

M

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V

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F

binding phosphothiophosphoric acid-adenylate ester: F13 (≠ Y16), V18 (= V21), S38 (= S41), G39 (= G42), S40 (≠ C43), G41 (= G44), K42 (= K45), S43 (≠ T46), T44 (= T47)

3c41J Abc protein artp in complex with amp-pnp/mg2+
39% identity, 98% coverage: 6:251/252 of query aligns to 3:242/242 of 3c41J

query
sites
3c41J

L

M

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G

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F

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R

C

C

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F

binding phosphoaminophosphonic acid-adenylate ester: F13 (≠ Y16), V18 (= V21), S38 (= S41), G39 (= G42), G41 (= G44), K42 (= K45), S43 (≠ T46), T44 (= T47)
binding magnesium ion: S43 (≠ T46), D163 (= D173)

2olkA Abc protein artp in complex with adp-beta-s
39% identity, 98% coverage: 6:251/252 of query aligns to 3:242/242 of 2olkA

query
sites
2olkA

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M

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S

A

A

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A

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N

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H

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A

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Y

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D

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L

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P

E

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K

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E

E

L

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K

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F

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K

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F

binding 5'-o-[(r)-hydroxy(thiophosphonooxy)phosphoryl]adenosine: F13 (≠ Y16), V18 (= V21), S38 (= S41), G39 (= G42), S40 (≠ C43), G41 (= G44), K42 (= K45), S43 (≠ T46), T44 (= T47)

2oljA Abc protein artp in complex with adp/mg2+
39% identity, 98% coverage: 6:251/252 of query aligns to 3:242/242 of 2oljA

query
sites
2oljA

L

M

I

I

S

D

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V

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H

H

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F

K

Y

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Y
x
F

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G

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V

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K

K

D

G

I

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K

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A

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G

C
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G

K
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K

T
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T

F

F

L

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C

C

F

L

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N

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G

E

I

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N

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K

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G

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F

T

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P

L

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F

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P

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M

M

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T

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F

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D

N

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A

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A

A

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K

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A

A

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A

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D

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K

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V

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-

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K

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D

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K

L

A

F

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A

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G

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I

I

A

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K

I

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S

A

A

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K

E

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K

E

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L

K

A

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N

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E

I

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T

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T

H

H

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A

A

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F

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K

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G

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L

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F

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K

H

E

E

L

R

T

T

E

K

R

A

Y

F

I

L

T

S

G

K

R

V

F

F

binding adenosine-5'-diphosphate: F13 (≠ Y16), V18 (= V21), S38 (= S41), G39 (= G42), S40 (≠ C43), G41 (= G44), K42 (= K45), S43 (≠ T46), T44 (= T47)

4u00A Crystal structure of ttha1159 in complex with adp (see paper)
35% identity, 96% coverage: 6:247/252 of query aligns to 2:236/241 of 4u00A

query
sites
4u00A

L

I

I

I

S

R

V

I

E

R

H

N

L

L

N

H

F

K

Y

W

Y
x
F

G

G

N

P

N

L

Q

H

V
|
V

L

L

K

K

D

G

I

I

N

H

L

L

S

E

I

V

Y

A

K

P

N

G

K

E

I

K

T

L

A

V

L

I

I

I

G

G

P

P

S
|
S

G
|
G

C
x
S

G
|
G

K
|
K

T
x
S

T
|
T

F

L

L

I

R

R

C

T

F

I

N

N

R

R

M

L

H

E

D

D

L

F

Y

Q

K

-

N

-

R

-

Y

-

E

E

G

G

K

E

I

V

Y

V

Q

D

G

G

E

L

N

S

I

V

L

K

T

D

K

R

R

A

I

L

I

R

E

E

L

I

R

R

G

R

K

E

I

V

G

G

M

M

V

V

F

F

Q

Q

K

Q

P

F

T

N

P

L

F

F

P

P

-

H

M

M

S

T

I

V

F

L

D

E

N

N

V

V

A

T

Y

-

G

-

L

-

K

-

L

L

K

A

G

P

V

M

K

R

N

V

K

R

E

R

E

W

I

P

R

R

E

E

R

K

V

A

E

E

K

K

A

K

-

A

-

L

-

E

-

L

L

L

K

E

Q

R

A

V

A

G

L

I

W

L

D

D

E

Q

V

A

K

R

D

-

K

-

L

-

F

-

E

K

S

Y

G

P

L

A

S

Q

L

L

S

S

G

G

Q

Q

R

R

L

V

V

A

I

I

A

A

R

R

V

A

L

L

A

A

V

M

E

E

P

P

D

K

I

I

I

M

L

L

F

F

D

D

E

E

P

P

T

T

S

S

A

A

L

L

D

D

P

P

I

E

A

M

T

V

A

G

K

E

I

V

E

L

E

D

L

V

V

M

S

R

E

D

L

L

-

A

K

Q

N

G

I

G

T

M

T

T

I

M

L

V

I

V

V

V

T

T

H

H

N

E

M

M

Q

G

Q

F

A

A

A

R

R

E

I

V

S

A

D

D

F

R

T

V

A

V

F

F

L

M

F

D

K

G

G

G

E

Q

L

I

I

V

E

E

F

E

S

G

E

R

T

P

E

E

K

E

L

I

F

F

T

T

N

R

P

P

E

K

K

E

E

E

L

R

T

T

E

R

R

S

Y

F

I

L

binding adenosine-5'-diphosphate: F12 (≠ Y16), V17 (= V21), S37 (= S41), G38 (= G42), S39 (≠ C43), G40 (= G44), K41 (= K45), S42 (≠ T46), T43 (= T47)

P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
36% identity, 93% coverage: 14:247/252 of query aligns to 11:241/343 of P30750

query
sites
P30750

F

F

Y

H

Y

Q

G

G

N

T

N

R

-

T

-

I

Q

Q

V

A

L

L

K

N

D

N

I

V

N

S

L

L

S

H

I

V

Y

P

K

A

N

G

K

Q

I

I

T

Y

A

G

L

V

I

I

G

G

P

A

S
|
S

G
|
G

C
x
A

G
|
G

K
|
K

T
x
S

T
|
T

F

L

L

I

R

R

C

C

F

V

N

N

R

L

M

L

H

-

D

-

L

-

Y

-

K

-

N

E

N

R

R

P

Y

T

E

E

G

G

K

S

I

V

I

L

Y

V

Q

D

G

G

E

Q

N

E

I

L

-

T

L

L

T

S

T

E

K

S

R

E

I

L

I

T

E

K

L

A

R

R

G

R

K

Q

I

I

G

G

M

M

V

I

F

F

Q

Q

K

H

P

F

T

N

P

L

F

L

P

S

M

S

-

R

S

T

I

V

F

F

D

G

N

N

V

V

A

A

Y

L

G

P

L

L

K

E

L

L

K

D

G

N

V

T

K

P

N

-

K

K

E

D

E

E

I

V

R

K

E

R

R

R

V

V

E

T

K

E

A

L

L

L

K

S

Q

L

A

V

A

G

L

L

W

G

D

D

E

-

V

-

K

K

D

H

K

D

L

S

F

Y

E

P

S

S

G

-

L

-

S

N

L

L

S

S

G

G

Q

Q

Q

K

Q

Q

R

R

L

V

V

A

I

I

A

A

R

R

V

A

L

L

A

A

V

S

E

N

P

P

D

K

I

V

I

L

L

L

F

C

D

D

E
|
E

P

A

T

T

S

S

A

A

L

L

D

D

P

P

I

A

A

T

T

T

A

R

K

S

I

I

E

L

E

E

L

L

V

-

S

-

E

-

L

L

K

K

N

D

I

I

T

N

-

R

-

L

-

G

-

L

T

T

I

I

L

L

I

L

V

I

T

T

H

H

N

E

M

M

Q

D

Q

V

A

V

A

K

R

R

I

I

S

C

D

D

F

C

T

V

A

A

F

V

L

I

F

S

K

N

G

G

E

E

L

L

I

I

E

E

F

Q

S

D

E

T

T

V

E

S

K

E

L

V

F

F

T

S

N

H

P

P

E

K

K

T

E

P

L

L

T

A

E

Q

R

K

Y

F

I

I

40:46 (vs. 41:47, 71% identical) binding ATP
E166 (= E174) mutation to Q: Exhibits little ATPase activity.

Sites not aligning to the query:

278:283 binding L-methionine
295 N→A: Reduces the binding of L-methionine to undetectable levels.
295:296 binding L-methionine

4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
36% identity, 92% coverage: 16:248/252 of query aligns to 11:237/240 of 4ymuJ

query
sites
4ymuJ

Y
x
F

G

G

N

S

N

L

Q

E

V
|
V

L

L

K

K

D

G

I

V

N

T

L

L

S

K

I

V

Y

N

K

K

N

G

K

E

I

V

T

V

A

V

L

I

I

I

G

G

P

P

S
|
S

G
|
G

C
x
S

G
|
G

K
|
K

T
x
S

T
|
T

F

L

L

L

R

R

C

C

F

I

N

N

R

L

M

L

H

E

D

E

L

P

Y

T

K

K

N

-

R

-

Y

-

E

-

G

G

K

E

I

V

I

F

Y

I

Q

D

G

G

E

V

N

K

I

I

L

N

T

N

T

G

K

K

-

V

R

N

I

I

I

N

E

K

L

V

R

R

G

Q

K

K

I

V

G

G

M

M

V

V

F

F

Q

Q

K

H

P

F

T

N

P

L

F

F

P

P

-

H

M

L

S

T

I

A

F

I

D

E

N

N

V

I

A

T

Y

L

G

A

-

P

L

V

K

K

L

V

K

K

G

K

V

M

K

-

N

N

K

K

E

K

E

E

I

A

R

E

E

E

R

L

V

A

E

V

K

D

A

L

L

L

K

A

Q

K

A

V

A

G

L

L

W

L

D

D

E

K

V

-

K

K

D

D

K

-

L

-

F

-

E

Q

S

Y

G

P

L

I

S

K

L

L

S

S

G

G

Q

Q

Q

K

Q

Q

R

R

L

L

V

A

I

I

A

A

R

R

V

A

L

L

A

A

V

M

E

Q

P

P

D

E

I

V

I

M

L

L

F

F

D

D

E
|
E

P

P

T

T

S

S

A

A

L

L

D

D

P

P

I

E

A

M

T

V

A

K

K

E

I

V

E

L

E

N

L

V

V

M

S

K

E

Q

L

L

K

A

N

N

-

E

I

G

T

M

T

T

I

M

L

V

I

V

V

V

T

T

H
|
H

N

E

M

M

Q

G

Q

F

A

A

A

R

R

E

I

V

S

G

D

D

F

R

T

V

A

I

F

F

L

M

F

D

K

D

G

G

E

V

L

I

I

V

E

E

F

E

S

G

E

T

T

P

E

E

K

E

L

I

F

F

T

Y

N

R

P

A

E

K

K

N

E

E

L

R

T

T

E

R

R

E

Y

F

I

L

T

S

binding adenosine-5'-triphosphate: F11 (≠ Y16), V16 (= V21), S36 (= S41), G37 (= G42), S38 (≠ C43), G39 (= G44), K40 (= K45), S41 (≠ T46), T42 (= T47), E162 (= E174), H194 (= H205)
binding magnesium ion: S41 (≠ T46), E162 (= E174)

6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
36% identity, 93% coverage: 14:247/252 of query aligns to 12:242/344 of 6cvlD

query
sites
6cvlD

F
|
F

Y

H

Y
x
Q

G

G

N

T

N

R

-

T

-
x
I

Q

Q

V

A

L

L

K

N

D

N

I

V

N

S

L

L

S

H

I

V

Y

P

K

A

N

G

K

Q

I

I

T

Y

A

G

L

V

I

I

G

G

P

A

S
|
S

G
|
G

C
x
A

G
|
G

K
|
K

T
x
S

T
|
T

F

L

L

I

R

R

C

C

F

V

N

N

R

L

M

L

H

-

D

-

L

-

Y

-

K

-

N

E

N

R

R

P

Y

T

E

E

G

G

K

S

I

V

I

L

Y

V

Q

D

G

G

E

Q

N

E

I

L

-

T

L

L

T

S

T

E

K

S

R

E

I

L

I

T

E

K

L

A

R

R

G

R

K

Q

I

I

G

G

M

M

V

I

F

F

Q

Q

K

H

P

F

T

N

P

L

F

L

P

S

M

S

-

R

S

T

I

V

F

F

D

G

N

N

V

V

A

A

Y

L

G

P

L

L

K

E

L

L

K

D

G

N

V

T

K

P

N

-

K

K

E

D

E

E

I

V

R

K

E

R

R

R

V

V

E

T

K

E

A

L

L

L

K

S

Q

L

A

V

A

G

L

L

W

G

D

D

E

-

V

-

K

K

D

H

K

D

L

S

F

Y

E

P

S

S

G

-

L

-

S
x
N

L

L

S
|
S

G

G

Q
|
Q

Q

K

Q

Q

R

R

L

V

V

A

I

I

A

A

R

R

V

A

L

L

A

A

V

S

E

N

P

P

D

K

I

V

I

L

L

L

F

C

D

D

E

Q

P

A

T

T

S

S

A

A

L

L

D

D

P

P

I

A

A

T

T

T

A

R

K

S

I

I

E

L

E

E

L

L

V

-

S

-

E

-

L

L

K

K

N

D

I

I

T

N

-

R

-

L

-

G

-

L

T

T

I

I

L

L

I

L

V

I

T

T

H
|
H

N

E

M

M

Q

D

Q

V

A

V

A

K

R

R

I

I

S

C

D

D

F

C

T

V

A

A

F

V

L

I

F

S

K

N

G

G

E

E

L

L

I

I

E

E

F

Q

S

D

E

T

T

V

E

S

K

E

L

V

F

F

T

S

N

H

P

P

E

K

K

T

E

P

L

L

T

A

E

Q

R

K

Y

F

I

I

binding phosphothiophosphoric acid-adenylate ester: F12 (= F14), Q14 (≠ Y16), I19 (vs. gap), S41 (= S41), G42 (= G42), A43 (≠ C43), G44 (= G44), K45 (= K45), S46 (≠ T46), T47 (= T47), N141 (≠ S148), S143 (= S150), Q146 (= Q153), H200 (= H205)

3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
36% identity, 93% coverage: 14:247/252 of query aligns to 12:242/344 of 3tuzC

query
sites
3tuzC

F
|
F

Y

H

Y
x
Q

G

G

N

T

N

R

-

T

-

I

Q

Q

V

A

L

L

K

N

D

N

I

V

N

S

L

L

S

H

I

V

Y

P

K

A

N

G

K

Q

I

I

T

Y

A

G

L

V

I

I

G

G

P

A

S

S

G
|
G

C

A

G
|
G

K
|
K

T
x
S

T
|
T

F

L

L

I

R

R

C

C

F

V

N

N

R

L

M

L

H

-

D

-

L

-

Y

-

K

-

N

E

N

R

R

P

Y

T

E

E

G

G

K

S

I

V

I

L

Y

V

Q

D

G

G

E

Q

N

E

I

L

-

T

L

L

T

S

T

E

K

S

R

E

I

L

I

T

E

K

L

A

R

R

G

R

K

Q

I

I

G

G

M

M

V

I

F

F

Q

Q

K

H

P

F

T

N

P

L

F

L

P

S

M

S

-

R

S

T

I

V

F

F

D

G

N

N

V

V

A

A

Y

L

G

P

L

L

K

E

L

L

K

D

G

N

V

T

K

P

N

-

K

K

E

D

E

E

I

V

R

K

E

R

R

R

V

V

E

T

K

E

A

L

L

L

K

S

Q

L

A

V

A

G

L

L

W

G

D

D

E

-

V

-

K

K

D

H

K

D

L

S

F

Y

E

P

S

S

G

-

L

-

S

N

L

L

S

S

G

G

Q

Q

Q

K

Q

Q

R

R

L

V

V

A

I

I

A

A

R

R

V

A

L

L

A

A

V

S

E

N

P

P

D

K

I

V

I

L

L

L

F

C

D

D

E

Q

P

A

T

T

S

S

A

A

L

L

D

D

P

P

I

A

A

T

T

T

A

R

K

S

I

I

E

L

E

E

L

L

V

-

S

-

E

-

L

L

K

K

N

D

I

I

T

N

-

R

-

L

-

G

-

L

T

T

I

I

L

L

I

L

V

I

T

T

H

H

N

E

M

M

Q

D

Q

V

A

V

A

K

R

R

I

I

S

C

D

D

F

C

T

V

A

A

F

V

L

I

F

S

K

N

G

G

E

E

L

L

I

I

E

E

F

Q

S

D

E

T

T

V

E

S

K

E

L

V

F

F

T

S

N

H

P

P

E

K

K

T

E

P

L

L

T

A

E

Q

R

K

Y

F

I

I

binding adenosine-5'-diphosphate: F12 (= F14), Q14 (≠ Y16), G42 (= G42), G44 (= G44), K45 (= K45), S46 (≠ T46), T47 (= T47)

Sites not aligning to the query:

binding selenomethionine: 274, 279, 281, 282, 283, 284, 311, 313

3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
36% identity, 93% coverage: 14:247/252 of query aligns to 12:242/344 of 3tuiC

query
sites
3tuiC

F
|
F

Y

H

Y

Q

G

G

N

T

N

R

-

T

-

I

Q

Q

V

A

L

L

K

N

D

N

I

V

N

S

L

L

S

H

I

V

Y

P

K

A

N

G

K

Q

I

I

T

Y

A

G

L

V

I

I

G

G

P

A

S

S

G
|
G

C
x
A

G
|
G

K
|
K

T
x
S

T
|
T

F

L

L

I

R

R

C

C

F

V

N

N

R

L

M

L

H

-

D

-

L

-

Y

-

K

-

N

E

N

R

R

P

Y

T

E

E

G

G

K

S

I

V

I

L

Y

V

Q

D

G

G

E

Q

N

E

I

L

-

T

L

L

T

S

T

E

K

S

R

E

I

L

I

T

E

K

L

A

R

R

G

R

K

Q

I

I

G

G

M

M

V

I

F

F

Q

Q

K

H

P

F

T

N

P

L

F

L

P

S

M

S

-

R

S

T

I

V

F

F

D

G

N

N

V

V

A

A

Y

L

G

P

L

L

K

E

L

L

K

D

G

N

V

T

K

P

N

-

K

K

E

D

E

E

I

V

R

K

E

R

R

R

V

V

E

T

K

E

A

L

L

L

K

S

Q

L

A

V

A

G

L

L

W

G

D

D

E

-

V

-

K

K

D

H

K

D

L

S

F

Y

E

P

S

S

G

-

L

-

S

N

L

L

S

S

G

G

Q

Q

Q

K

Q

Q

R

R

L

V

V

A

I

I

A

A

R

R

V

A

L

L

A

A

V

S

E

N

P

P

D

K

I

V

I

L

L

L

F

C

D

D

E

Q

P

A

T

T

S

S

A

A

L

L

D

D

P

P

I

A

A

T

T

T

A

R

K

S

I

I

E

L

E

E

L

L

V

-

S

-

E

-

L

L

K

K

N

D

I

I

T

N

-

R

-

L

-

G

-

L

T

T

I

I

L

L

I

L

V

I

T

T

H

H

N

E

M

M

Q

D

Q

V

A

V

A

K

R

R

I

I

S

C

D

D

F

C

T

V

A

A

F

V

L

I

F

S

K

N

G

G

E

E

L

L

I

I

E

E

F

Q

S

D

E

T

T

V

E

S

K

E

L

V

F

F

T

S

N

H

P

P

E

K

K

T

E

P

L

L

T

A

E

Q

R

K

Y

F

I

I

binding adenosine-5'-diphosphate: F12 (= F14), G42 (= G42), A43 (≠ C43), G44 (= G44), K45 (= K45), S46 (≠ T46), T47 (= T47)

P02915 Histidine/lysine/arginine/ornithine transport ATP-binding protein HisP; EC 7.4.2.1 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see paper)
35% identity, 99% coverage: 1:249/252 of query aligns to 2:255/258 of P02915

query
sites
P02915

M

M

S

S

E

E

N

N

I

K

L

L

I

H

S

V

V

I

E

D

H

-

L

L

N

H

F

K

Y

R

Y

Y

G

G

N

G

N

H

Q

E

V

V

L

L

K

K

D

G

I

V

N

S

L

L

S

Q

I

A

Y

R

K

A

N

G

K

D

I

V

T

I

A

S

L

I

I

I

G

G

P

S

S
|
S

G
|
G

C

S

G
|
G

K
|
K

T
x
S

T
|
T

F

F

L

L

R

R

C

C

F

I

N

N

R

-

M

-

H

-

D

-

L

-

Y

F

K

L

N

E

N

K

R

P

Y

S

E

E

G

G

K

A

I

I

Y

V

Q

N

G

G

E

Q

N

N

I

I

L

N

T

L

T

V

K

R

-

D

-

K

-

D

-

G

-

Q

-

L

-

K

-

V

-

A

-

D

-

K

-

N

R

Q

I

L

I

R

E

L

L

L

R

R

G

T

K

R

I

L

G

T

M

M

V

V

F

F

Q

Q

K

H

P

F

T

N

P

L

F

W

P

S

-

H

M

M

S

T

I

V

F

L

D

E

N

N

V

V

A

M

Y

E

G

A

-

P

L

I

K

Q

L

V

K

L

G

G

V

L

K

-

N

S

K

K

E

H

E

D

I

A

R

R

E

E

R

R

V

A

E

L

K

K

A

Y

L

L

K

A

Q

K

A

V

A

G

L

I

W

D

D

E

E

R

V

A

K

Q

D

G

K

K

L

Y

F

-

E

-

S

-

G

P

L

V

S

H

L

L

S

S

G

G

Q

Q

R

R

L

V

V

S

I

I

A

A

R

R

V

A

L

L

A

A

V

M

E

E

P

P

D

D

I

V

I

L

L

L

F

F

D

D

E

E

P

P

T

T

S

S

A

A

L

L

D

D

P

P

I

E

A

L

T

V

A

G

K

E

I

V

E

L

E

R

L

I

V

M

S

Q

E

Q

L

L

-

A

K

E

N

E

I

G

T

K

T

T

I

M

L

V

I

V

V

V

T

T

H

H

N

E

M

M

Q

G

Q

F

A

A

A

R

R

H

I

V

S

S

D

S

F

H

T

V

A

I

F

F

L

L

F

H

K

Q

G

G

E

K

L

I

I

E

E

E

F

E

S

G

E

D

T

P

E

E

K

Q

L

V

F

F

T

G

N

N

P

P

E

Q

K

S

E

P

L

R

T

L

E

Q

R

Q

Y

F

I

L

T

K

G

G

S41 (= S41) binding ATP
G42 (= G42) binding ATP
G44 (= G44) binding ATP
K45 (= K45) binding ATP
S46 (≠ T46) binding ATP
T47 (= T47) binding ATP

7ahhC Opua inhibited inward-facing, sbd docked (see paper)
34% identity, 96% coverage: 7:247/252 of query aligns to 3:263/382 of 7ahhC

query
sites
7ahhC

I

I

S

K

V

I

E

E

H

H

L

L

N

T

F

K

Y

I

Y
x
F

G

G

N

K

-

R

-

I

-

K

-

T

-

A

-

L

-

T

-

M

-

V

-

E

-

K

-

G

-

E

-

P

-

K

N

N

Q

E

V

I

L

L

K

K

-

K

-

T

-

G

-

A

-
x
T

-
x
V

-
x
G

-

V

-

Y

D

D

I

T

N

N

L

F

S

E

I

I

Y

N

K

E

N

G

K

E

I

I

T

F

A

V

L

I

I

M

G

G

P

L

S

S

G
|
G

C

S

G
|
G

K
|
K

T

S

T

T

F

L

L

L

R

R

C

L

F

L

N

N

R

R

M

L

H

I

D

E

L

-

Y

-

K

-

N

-

R

P

Y

T

E

S

G

G

K

K

I

I

I

F

Y

I

Q

D

G

N

E

Q

N

D

I

V

L

A

T

T

T

L

K

N

R

K

-

E

-

D

I

L

E

Q

L

V

R

R

G

R

K

K

-

T

I

M

G

S

M

M

V

V

F

F

Q

Q

K

N

P

F

T

G

P

L

F

F

P

P

M

H

-

R

S

T

I

I

F

L

D

E

N

N

V

T

A

E

Y

Y

G

G

L

L

K

E

L

V

K

Q

G

N

V

V

K

P

N

-

K

K

E

E

I

R

R

R

E

K

R

R

V

A

E

E

K

K

A

A

L

L

K

D

Q

N

A

A

A

N

L

L

W

L

D

D

E

-

V

F

K

K

D

D

K

Q

L

Y

F

P

E

K

S

Q

G

-

L

-

S

-

L

L

S

S

G

G

Q

M

Q

Q

R

R

L

V

V

G

I

L

A

A

R

R

V

A

L

L

A

A

V

N

E

D

P

P

D

E

I

I

I

L

L

L

F

M

D
|
D

E
|
E

P

A

T

F

S

S

A

A

L

L

D

D

P

P

I

L

A

I

T

R

A

R

K

E

I

M

E

Q

E

D

L

E

V

L

S

L

E

E

L

L

-

Q

-

A

K

K

N

F

I

Q

T

K

T

T

I

I

L

I

I

F

V

V

T

S

H

H

N

D

M

L

Q

N

Q

E

A

A

A

L

R

R

I

I

S

G

D

D

F

R

T

I

A

A

F

I

L

M

F

K

K

D

G

G

E

K

L

I

I

M

E

Q

F

I

S

G

E

T

T

G

E

E

K

E

L

I

F

L

T

T

N

N

P

P

E

A

K

N

E

D

L

Y

T

V

E

K

R

T

Y

F

I

V

binding phosphoaminophosphonic acid-adenylate ester: F12 (≠ Y16), T39 (vs. gap), V40 (vs. gap), G41 (vs. gap), G62 (= G42), G64 (= G44), K65 (= K45), D187 (= D173), E188 (= E174)

Sites not aligning to the query:

binding (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide: 275, 297, 298

7aheC Opua inhibited inward facing (see paper)
34% identity, 96% coverage: 7:247/252 of query aligns to 3:263/382 of 7aheC

query
sites
7aheC

I

I

S

K

V

I

E

E

H

H

L

L

N

T

F

K

Y

I

Y

F

G

G

N

K

-

R

-

I

-

K

-

T

-

A

-

L

-

T

-

M

-

V

-

E

-

K

-

G

-

E

-

P

-

K

N

N

Q

E

V

I

L

L

K

K

-

K

-

T

-

G

-

A

-

T

-

V

-

G

-

V

-

Y

D

D

I

T

N

N

L

F

S

E

I

I

Y

N

K

E

N

G

K

E

I

I

T

F

A

V

L

I

I

M

G

G

P

L

S

S

G

G

C

S

G

G

K

K

T

S

T

T

F

L

L

L

R

R

C

L

F

L

N

N

R

R

M

L

H

I

D

E

L

-

Y

-

K

-

N

-

R

P

Y

T

E

S

G

G

K

K

I

I

I

F

Y

I

Q

D

G

N

E

Q

N

D

I

V

L

A

T

T

T

L

K

N

R

K

-

E

-

D

I

L

E

Q

L

V

R

R

G

R

K

K

-

T

I

M

G

S

M

M

V

V

F

F

Q

Q

K

N

P

F

T

G

P

L

F

F

P

P

M

H

-

R

S

T

I

I

F

L

D

E

N

N

V

T

A

E

Y

Y

G

G

L

L

K

E

L

V

K

Q

G

N

V

V

K

P

N

-

K

K

E

E

I

R

R

R

E

K

R

R

V

A

E

E

K

K

A

A

L

L

K

D

Q

N

A

A

A

N

L

L

W

L

D

D

E

-

V

F

K

K

D

D

K

Q

L

Y

F

P

E

K

S

Q

G

-

L

-

S

-

L

L

S

S

G

G

Q

M

Q

Q

R

R

L

V

V

G

I

L

A

A

R

R

V

A

L

L

A

A

V

N

E

D

P

P

D

E

I

I

I

L

L

L

F

M

D

D

E

E

P

A

T

F

S

S

A

A

L

L

D

D

P

P

I

L

A

I

T

R

A

R

K

E

I

M

E

Q

E

D

L

E

V

L

S

L

E

E

L

L

-

Q

-

A

K

K

N

F

I

Q

T

K

T

T

I

I

L

I

I

F

V

V

T

S

H

H

N

D

M

L

Q

N

Q

E

A

A

A

L

R

R

I

I

S

G

D

D

F

R

T

I

A

A

F

I

L

M

F

K

K

D

G

G

E

K

L

I

I

M

E

Q

F

I

S

G

E

T

T

G

E

E

K

E

L

I

F

L

T

T

N

N

P

P

E

A

K

N

E

D

L

Y

T

V

E

K

R

T

Y

F

I

V

Sites not aligning to the query:

binding (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide: 275, 297, 298

7ahdC Opua (e190q) occluded (see paper)
35% identity, 92% coverage: 7:238/252 of query aligns to 3:254/260 of 7ahdC

query
sites
7ahdC

I

I

S

K

V

I

E

E

H

H

L

L

N

T

F

K

Y

I

Y
x
F

G

G

N

K

-

R

-

I

-

K

-

T

-

A

-

L

-

T

-

M

-

V

-

E

-

K

-

G

-

E

-

P

-

K

N

N

Q

E

V

I

L

L

K

K

-

K

-

T

-

G

-

A

-
x
T

-

V

-

G

-

V

-

Y

D

D

I

T

N

N

L

F

S

E

I

I

Y

N

K

E

N

G

K

E

I

I

T

F

A

V

L

I

I

M

G

G

P

L

S
|
S

G
|
G

C

S

G
|
G

K
|
K

T
x
S

T
|
T

F

L

L

L

R

R

C

L

F

L

N

N

R

R

M

L

H

I

D

E

L

-

Y

-

K

-

N

-

R

P

Y

T

E

S

G

G

K

K

I

I

I

F

Y

I

Q

D

G

N

E

Q

N

D

I

V

L

A

T

T

T

L

K

N

R

K

-

E

-

D

I

L

E

Q

L

V

R

R

G

R

K

K

-

T

I

M

G

S

M

M

V

V

F

F

Q
|
Q

K

N

P

F

T

G

P

L

F

F

P

P

M

H

-

R

S

T

I

I

F

L

D

E

N

N

V

T

A

E

Y

Y

G

G

L

L

K

E

L

V

K

Q

G

N

V

V

K

P

N

-

K

K

E

E

I

R

R

R

E

K

R

R

V

A

E

E

K

K

A

A

L

L

K

D

Q

N

A

A

A

N

L

L

W

L

D

D

E

-

V

F

K

K

D

D

K

Q

L

Y

F

P

E
x
K

S
x
Q

G

-

L

-

S

-

L

L

S
|
S

G

G

G
|
G

Q
x
M

Q

Q

R

R

L

V

V

G

I

L

A

A

R

R

V

A

L

L

A

A

V

N

E

D

P

P

D

E

I

I

I

L

L

L

F

M

D

D

E
x
Q

P

A

T

F

S

S

A

A

L

L

D

D

P

P

I

L

A

I

T

R

A

R

K

E

I

M

E

Q

E

D

L

E

V

L

S

L

E

E

L

L

-

Q

-

A

K

K

N

F

I

Q

T

K

T

T

I

I

L

I

I

F

V

V

T

S

H
|
H

N

D

M

L

Q

N

Q

E

A

A

A

L

R

R

I

I

S

G

D

D

F

R

T

I

A

A

F

I

L

M

F

K

K

D

G

G

E

K

L

I

I

M

E

Q

F

I

S

G

E

T

T

G

E

E

K

E

L

I

F

L

T

T

N

N

P

P

binding adenosine-5'-triphosphate: F12 (≠ Y16), T39 (vs. gap), S61 (= S41), G62 (= G42), G64 (= G44), K65 (= K45), S66 (≠ T46), T67 (= T47), Q111 (= Q93), K161 (≠ E144), Q162 (≠ S145), S164 (= S150), G166 (= G152), M167 (≠ Q153), Q188 (≠ E174), H221 (= H205)

1b0uA Atp-binding subunit of the histidine permease from salmonella typhimurium (see paper)
34% identity, 94% coverage: 12:249/252 of query aligns to 8:251/258 of 1b0uA

query
sites
1b0uA

L

L

N

H

F

K

Y

R

Y
|
Y

G

G

N

G

N
x
H

Q

E

V

V

L

L

K

K

D

G

I

V

N

S

L

L

S

Q

I

A

Y

R

K

A

N

G

K

D

I

V

T

I

A

S

L

I

I

I

G

G

P

S

S
|
S

G
|
G

C

S

G
|
G

K
|
K

T
x
S

T
|
T

F

F

L

L

R

R

C

C

F

I

N

N

R

-

M

-

H

-

D

-

L

-

Y

F

K

L

N

E

N

K

R

P

Y

S

E

E

G

G

K

A

I

I

Y

V

Q

N

G

G

E

Q

N

N

I

I

L

N

T

L

T

V

K

R

-

D

-

K

-

D

-

G

-

Q

-

L

-

K

-

V

-

A

-

D

-

K

-

N

R

Q

I

L

I

R

E

L

L

L

R

R

G

T

K

R

I

L

G

T

M

M

V

V

F

F

Q

Q

K

H

P

F

T

N

P

L

F

W

P

S

-

H

M

M

S

T

I

V

F

L

D

E

N

N

V

V

A

M

Y

E

G

A

-

P

L

I

K

Q

L

V

K

L

G

G

V

L

K

-

N

S

K

K

E

H

E

D

I

A

R

R

E

E

R

R

V

A

E

L

K

K

A

Y

L

L

K

A

Q

K

A

V

A

G

L

I

W

D

D

E

E

R

V

A

K

Q

D

G

K

K

L

Y

F

-

E

-

S

-

G

P

L

V

S

H

L

L

S

S

G

G

Q

Q

R

R

L

V

V

S

I

I

A

A

R

R

V

A

L

L

A

A

V

M

E

E

P

P

D

D

I

V

I

L

L

L

F

F

D

D

E

E

P

P

T

T

S

S

A

A

L

L

D

D

P

P

I

E

A

L

T

V

A

G

K

E

I

V

E

L

E

R

L

I

V

M

S

Q

E

Q

L

L

-

A

K

E

N

E

I

G

T

K

T

T

I

M

L

V

I

V

V

V

T

T

H

H

N

E

M

M

Q

G

Q

F

A

A

A

R

R

H

I

V

S

S

D

S

F

H

T

V

A

I

F

F

L

L

F

H

K

Q

G

G

E

K

L

I

I

E

E

E

F

E

S

G

E

D

T

P

E

E

K

Q

L

V

F

F

T

G

N

N

P

P

E

Q

K

S

E

P

L

R

T

L

E

Q

R

Q

Y

F

I

L

T

K

G

G

binding adenosine-5'-triphosphate: Y12 (= Y16), H15 (≠ N19), S37 (= S41), G38 (= G42), G40 (= G44), K41 (= K45), S42 (≠ T46), T43 (= T47)

4ayxA Structure of the human mitochondrial abc transporter, abcb10 (rod form b) (see paper)
35% identity, 87% coverage: 21:238/252 of query aligns to 356:569/571 of 4ayxA

query
sites
4ayxA

V

I

L

F

K

Q

D

D

I

F

N

S

L

L

S

S

I

I

Y

P

K

S

N

G

K

S

I

V

T

T

A

A

L

L

I

V

G

G

P

P

S
|
S

G
|
G

C

S

G
|
G

K
|
K

T
x
S

T
|
T

F

V

L

L

R

S

C

L

F

L

N

L

R

R

M

L

H

Y

D

D

L

-

Y

-

K

-

N

-

R

P

Y

A

E

S

G

G

K

T

I

I

I

S

Y

L

Q

D

G

G

E

H

N

D

I

I

L

R

T

Q

T

L

K

N

R

P

I

V

I

W

E

-

L

L

R

R

G

S

K

K

I

I

G

G

M

T

V

V

F

S

Q
|
Q

K

E

P

P

T

I

P

L

F

F

P

S

M

C

S

S

I

I

F

A

D

E

N

N

V

I

A

A

Y

Y

G

G

L

A

K

D

L

D

K

P

G

S

V

S

K

V

N

T

K

A

E

E

I

I

R

Q

E

R

R

V

V

A

E

E

K

V

A

A

L

N

K

A

Q

V

A

A

A

F

L

I

W

R

D

N

-

F

-

P

-

Q

E

G

V

F

K

N

D

T

K

V

L

V

F

G

E

E

S

K

G

G

L

V

S

L

L

L

S

S

G

G

Q

Q

Q

K

Q

Q

R

R

L

I

V

A

I

I

A

A

R

R

V

A

L

L

A

L

V

K

E

N

P

P

D

K

I

I

I

L

L

L

F

L

D

D

E

E

P

A

T

T

S

S

A

A

L

L

D

D

P

A

I

E

A

N

T

E

A

Y

K

L

I

V

E

Q

E

E

L

A

V

L

S

D

E

R

L

L

K

M

N

D

I

G

T

R

T

T

I

V

L

L

I

V

V

I

T

A

H

H

N

R

M

L

Q

-

Q

S

A

T

A

I

R

K

I

N

S

A

D

N

F

M

T

V

A

A

F

V

L

L

F

D

K

Q

G

G

E

K

L

I

I

T

E

E

F

Y

S

G

E

K

T

H

E

E

K

E

L

L

F

L

T

S

N

K

P

P

binding phosphomethylphosphonic acid adenylate ester: S376 (= S41), G377 (= G42), G379 (= G44), K380 (= K45), S381 (≠ T46), T382 (= T47)
binding magnesium ion: S381 (≠ T46), Q422 (= Q93)

Sites not aligning to the query:

7qkrA Cryo-em structure of abc transporter ste6-2p from pichia pastoris with verapamil at 3.2 a resolution (see paper)
34% identity, 87% coverage: 21:240/252 of query aligns to 379:600/1199 of 7qkrA

query
sites
7qkrA

V
|
V

L

L

K

S

D

D

I

F

N

T

L

L

S

D

I

I

Y

K

K

P

N

G

K

Q

I

T

T

I

A

A

L

L

I

V

G

G

P

E

S
|
S

G
|
G

C
x
S

G
|
G

K
|
K

T
x
S

T
|
T

F

V

L

I

R

A

C

L

F

L

N

E

R

R

M

F

H

Y

D

E

L

Y

Y

L

K

-

N

-

R

-

Y

-

E

D

G

G

K

E

I

I

I

L

Y

L

Q

D

G

G

E

V

N

D

I

-

L

L

T

K

T

S

K

L

R

N

I

I

I

K

E

W

L

V

R

R

G

Q

K

Q

I

M

G

A

M

L

V

V

F

Q

Q

Q

K

E

P

P

T

V

P

L

F

F

P

A

M

A

S

S

I

I

F

Y

D

E

N

N

V

V

A

C

Y

Y

G

G

L

L

-

V

-

G

-

S

K

K

L

Y

K

E

G

N

V

V

K

T

N

E

K

K

E

V

E

K

I

-

R

R

E

E

R

L

V

V

E

E

K

K

A

A

L

C

K

K

Q

D

A

A

A

N

L

A

W

W

D

E

E

F

V

I

K

S

D

Q

-

M

-

S

-

N

-

G

-

L

-

D

-

T

K

E

L

V

F

G

E

E

S

R

G

G

L

L

S

S

L

L

S

S

G

G

Q

Q

Q

K

Q

Q

R

R

L

I

V

A

I

I

A

A

R

R

V

A

L

V

A

I

V

S

E

E

P

P

D

K

I

I

I

L

L

L

F

L

D

D

E

E

P

A

T

T

S

S

A

A

L

L

D

D

P

T

I

R

A

S

T

E

A

G

K

I

I

V

E

Q

E

D

L

A

V

L

S

N

E

R

L

L

K

S

N

E

I

T

T

R

T

T

I

T

L

I

I

V

V

I

T

A

H

H

N

R

M

L

Q

S

Q

T

A

I

A

Q

R

N

I

-

S

A

D

D

F

L

T

I

A

V

F

V

L

L

F

S

K

K

G

G

E

K

L

I

I

V

E

E

F

T

S

G

E

S

T

H

E

K

K

E

L

L

F

L

T

K

N

K

P

K

E

G

K

K

binding phosphoaminophosphonic acid-adenylate ester: V379 (= V21), S399 (= S41), G400 (= G42), S401 (≠ C43), G402 (= G44), K403 (= K45), S404 (≠ T46), T405 (= T47)

Sites not aligning to the query:

5d3mA Folate ecf transporter: amppnp bound state (see paper)
33% identity, 97% coverage: 2:245/252 of query aligns to 2:239/280 of 5d3mA

query
sites
5d3mA

S

S

E

D

N

N

I

I

L

-

I

I

S

S

V

F

E

D

H

H

L

V

N

T

F
|
F

Y

T

Y

Y

G

P

N

D

N

S

Q

P

-

R

-

P

V

A

L

L

K

S

D

D

I

L

N

S

L

F

S

A

I

I

Y

E

K

R

N

G

K

S

I

W

T

T

A

A

L

L

I

I

G

G

P

H

S
x
N

G
|
G

C

S

G

G

K
|
K

T
x
S

T

T