SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_035854753.1 NCBI__GCF_000519045.1:WP_035854753.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 8 hits to proteins with known functional sites (download)

5yumA Crystallographic structures of ilvn.Val/ile complexes:conformational selectivity for feedback inhibition of ahass (see paper)
59% identity, 85% coverage: 15:102/103 of query aligns to 4:91/91 of 5yumA

query
sites
5yumA
A
 
V
V
 
I
L
 
L
E
 
E
I
 
L
D
 
T
V
 
V
N
 
R
N
|
N
H
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H
A
 
P
G
 
G
V
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V
M
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M
S
 
T
H
 
H
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V
V
 
C
G
 
G
L
 
L
F
 
F
S
 
A
R
 
R
R
 
R
A
 
A
Y
 
F
N
 
N
V
 
V
E
 
E
G
 
G
I
 
I
L
 
L
C
|
C
L
 
L
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D
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D
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K
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E
 
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D
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Q
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L
P
 
E
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Q
M
 
M
I
 
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I
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D
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L
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E
D
|
D
V
 
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A
 
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K
I
 
V
R
 
Q
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R
H
 
N
N
 
Q
A
 
S
D
 
D
H
 
P
A
 
T
V
 
M
F
 
F
Q
 
N
N
 
K
L
 
I
E
 
A
A
 
V
F
 
F
F
 
F
R
 
Q

5yppE Crystal structure of ilvn.Val-1a (see paper)
59% identity, 85% coverage: 15:102/103 of query aligns to 4:91/91 of 5yppE

query
sites
5yppE
A
 
V
V
 
I
L
 
L
E
 
E
I
 
L
D
 
T
V
 
V
N
 
R
N
 
N
H
|
H
A
 
P
G
 
G
V
 
V
M
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M
S
 
T
H
 
H
V
 
V
V
 
C
G
 
G
L
 
L
F
 
F
S
 
A
R
 
R
R
 
R
A
 
A
Y
 
F
N
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N
V
|
V
E
 
E
G
 
G
I
 
I
L
 
L
C
|
C
L
 
L
P
 
P
L
 
I
A
 
Q
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D
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S
G
 
D
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K
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S
R
 
H
I
 
I
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W
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L
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L
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V
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N
E
 
D
D
 
D
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Q
R
 
R
L
 
L
P
 
E
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Q
M
 
M
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I
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S
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Q
V
 
I
E
 
D
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K
L
 
L
E
 
E
D
 
D
V
 
V
A
 
V
A
 
K
I
 
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R
 
Q
R
 
R
H
 
N
N
 
Q
A
 
S
D
 
D
H
 
P
A
 
T
V
 
M
F
 
F
Q
 
N
N
 
K
L
 
I
E
 
A
A
 
V
F
 
F
F
 
F
R
 
Q

2pc6A Crystal structure of putative acetolactate synthase- small subunit from nitrosomonas europaea (see paper)
38% identity, 69% coverage: 14:84/103 of query aligns to 3:74/164 of 2pc6A

query
sites
2pc6A
R
 
R
A
 
H
V
 
I
L
 
I
E
 
S
I
 
L
D
 
L
V
 
M
N
 
E
N
 
N
H
 
E
A
 
A
G
 
G
V
 
A
M
 
L
S
 
S
H
 
R
V
 
V
V
 
A
G
 
G
L
 
L
F
 
F
S
 
S
R
 
A
R
 
R
A
 
G
Y
 
Y
N
 
N
V
 
I
E
 
E
G
 
S
I
 
L
L
 
S
C
 
V
L
 
A
P
 
P
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T
A
 
E
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D
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G
 
T
Q
 
L
S
 
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M
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L
 
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V
 
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N
 
N
-
 
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D
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E
R
 
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L
 
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P
 
E
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Q
M
 
I
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K
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Q
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L
E
x
N
K
 
K
L
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L
E
 
I
D
 
E
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V
A
 
V
A
 
K
I
 
L

P9WKJ3 Putative acetolactate synthase small subunit; Acetohydroxy-acid synthase small subunit; AHAS; ALS; EC 2.2.1.6 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
34% identity, 79% coverage: 17:97/103 of query aligns to 8:89/168 of P9WKJ3

query
sites
P9WKJ3
L
 
L
E
 
S
I
 
V
D
 
L
V
 
V
N
 
E
N
 
D
H
 
K
A
 
P
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G
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L
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A
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R
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V
 
A
G
 
A
L
 
L
F
 
F
S
 
S
R
 
R
R
 
R
A
 
G
Y
 
F
N
 
N
V
 
I
E
 
E
G
 
S
I
 
L
L
 
A
C
 
V
L
 
G
P
 
A
L
 
T
A
 
E
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C
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x
K
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D
Q
 
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S
R
 
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I
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E
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N
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L

A0QUX7 Acetolactate synthase small subunit; Acetohydroxy-acid synthase small subunit; AHAS; ALS; EC 2.2.1.6 from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) (Mycobacterium smegmatis) (see paper)
33% identity, 79% coverage: 17:97/103 of query aligns to 10:91/170 of A0QUX7

query
sites
A0QUX7
L
 
L
E
 
S
I
 
V
D
 
L
V
 
V
N
 
E
N
 
D
H
 
K
A
 
P
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G
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V
M
 
L
S
 
A
H
 
R
V
 
V
V
 
S
G
 
S
L
 
L
F
 
F
S
 
S
R
 
R
R
 
R
A
 
G
Y
 
F
N
 
N
V
 
I
E
 
Q
G
 
S
I
 
L
L
 
A
C
 
V
L
 
G
P
 
A
L
 
T
A
 
E
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Q
S
x
K
G
 
D
Q
 
M
S
 
S
R
 
R
I
 
M
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T
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I
L
 
V
V
 
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N
 
S
-
 
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E
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D
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S
R
 
P
L
 
L
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E
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Q
M
 
I
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K
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N
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I
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I
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E
A
 
E
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D
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N
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V
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S
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R
N
 
E
L
 
L

Q9FFF4 Acetolactate synthase small subunit 2, chloroplastic; ALS-interacting protein 3; Acetohydroxy-acid synthase small subunit 2; Protein valine-tolerant 1 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
31% identity, 81% coverage: 16:98/103 of query aligns to 309:390/477 of Q9FFF4

query
sites
Q9FFF4
V
 
T
L
 
L
E
 
S
I
 
L
D
 
L
V
 
V
N
 
A
N
 
N
H
 
V
A
 
P
G
 
G
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V
M
 
L
S
 
N
H
 
L
V
 
I
V
 
T
G
 
G
L
 
A
F
 
I
S
 
S
R
 
R
R
 
R
A
 
G
Y
 
Y
N
 
N
V
 
I
E
 
Q
G
 
S
I
 
L
L
 
A
C
 
V
L
 
G
P
 
P
L
 
A
A
 
E
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K
S
 
E
G
 
G
Q
 
L
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S
R
 
R
I
 
I
W
 
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T
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I
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D
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E
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N
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I
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D
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A
 
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I
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-
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H
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F
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A
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E
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R
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E

Sites not aligning to the query:

Q93YZ7 Acetolactate synthase small subunit 1, chloroplastic; ALS-interacting protein 1; Acetohydroxyacid synthase small subunit 1 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
29% identity, 92% coverage: 4:98/103 of query aligns to 309:402/491 of Q93YZ7

query
sites
Q93YZ7
L
 
L
S
 
T
Q
 
D
T
 
E
E
 
D
R
 
T
Q
 
S
T
 
G
L
 
L
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R
R
 
S
A
 
H
V
 
T
L
 
L
E
 
S
I
 
L
D
 
L
V
 
V
N
 
N
N
x
D
H
 
I
A
 
P
G
|
G
V
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M
x
L
S
 
N
H
 
I
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V
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T
G
 
G
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|
F
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A
R
 
R
R
 
R
A
 
G
Y
|
Y
N
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N
V
x
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E
 
Q
G
 
S
I
 
L
L
 
A
C
 
V
L
 
G
P
 
H
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A
A
 
E
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T
S
 
K
G
 
G
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I
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S
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R
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I
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T
L
 
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V
 
I
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P
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A
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D
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R
 
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P
 
S
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K
M
 
L
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V
K
 
Q
Q
 
Q
V
 
L
E
 
Y
K
 
K
L
 
L
E
 
V
D
 
D
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V
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H
A
 
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I
 
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-
R
 
-
H
 
H
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D
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L
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H
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F
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N
 
E
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E

Sites not aligning to the query:

6vz8G Arabidopsis thaliana acetohydroxyacid synthase complex with valine bound (see paper)
31% identity, 80% coverage: 17:98/103 of query aligns to 6:86/159 of 6vz8G

query
sites
6vz8G
L
 
L
E
 
S
I
 
L
D
 
L
V
 
V
N
 
N
N
x
D
H
 
I
A
 
P
G
|
G
V
|
V
M
x
L
S
 
N
H
 
I
V
 
V
V
 
T
G
 
G
L
 
V
F
 
F
S
 
A
R
 
R
R
 
R
A
 
G
Y
 
Y
N
|
N
V
x
I
E
 
Q
G
 
S
I
 
L
L
 
A
C
x
V
L
 
G
P
 
H
L
 
A
A
 
E
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T
S
 
K
G
 
G
Q
 
I
S
 
S
R
 
R
I
 
I
W
 
T
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T
L
 
V
V
 
I
N
 
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A
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D
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E
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S
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S
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K
 
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Q
 
Q
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L
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Y
K
 
K
L
 
L
E
 
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D
 
D
V
 
V
A
 
H
A
 
E
I
 
V
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-
R
 
-
H
 
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N
 
D
A
 
L
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T
H
 
H
A
 
L
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P
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F
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E
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E

Query Sequence

>WP_035854753.1 NCBI__GCF_000519045.1:WP_035854753.1
MNALSQTERQTLSRAVLEIDVNNHAGVMSHVVGLFSRRAYNVEGILCLPLADSGQSRIWL
LVNEDQRLPQMIKQVEKLEDVAAIRRHNADHAVFQNLEAFFRA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory