SitesBLAST
Comparing WP_036258903.1 NCBI__GCF_000746085.1:WP_036258903.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
1vpeA Crystallographic analysis of phosphoglycerate kinase from the hyperthermophilic bacterium thermotoga maritima (see paper)
48% identity, 97% coverage: 12:405/406 of query aligns to 4:398/398 of 1vpeA
- active site: R35 (= R43), K196 (= K203), G353 (= G360), G376 (= G383)
- binding phosphoaminophosphonic acid-adenylate ester: G194 (= G201), A195 (= A202), K196 (= K203), K200 (= K207), G218 (= G225), A219 (≠ G226), N316 (= N322), P318 (= P324), G320 (= G326), V321 (≠ A327), E323 (= E329), G352 (= G359), G353 (= G360), D354 (= D361), S355 (≠ T362)
P36204 Bifunctional PGK/TIM; EC 2.7.2.3; EC 5.3.1.1 from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) (see paper)
48% identity, 97% coverage: 12:404/406 of query aligns to 5:398/654 of P36204
- R36 (= R43) binding substrate
- R118 (= R124) binding substrate
- R151 (= R157) binding substrate
1phpA Structure of the adp complex of the 3-phosphoglycerate kinase from bacillus stearothermophilus at 1.65 angstroms (see paper)
48% identity, 96% coverage: 12:400/406 of query aligns to 5:391/394 of 1phpA
- active site: R36 (= R43), K197 (= K203), G351 (= G360), G374 (= G383)
- binding adenosine-5'-diphosphate: G195 (= G201), K201 (= K207), G219 (= G225), G220 (= G226), L237 (≠ I243), N316 (= N322), P318 (= P324), G320 (= G326), V321 (≠ A327), E323 (= E329), G350 (= G359), D352 (= D361), S353 (≠ T362)
P18912 Phosphoglycerate kinase; EC 2.7.2.3 from Geobacillus stearothermophilus (Bacillus stearothermophilus) (see paper)
48% identity, 96% coverage: 12:400/406 of query aligns to 5:391/394 of P18912
4ng4B Structure of phosphoglycerate kinase (cbu_1782) from coxiella burnetii (see paper)
45% identity, 97% coverage: 9:400/406 of query aligns to 1:384/389 of 4ng4B
- active site: R35 (= R43), K191 (= K203), G344 (= G360), G367 (= G383)
- binding adenosine-5'-diphosphate: G189 (= G201), K195 (= K207), G213 (= G225), I286 (= I298), N310 (= N322), G311 (= G323), P312 (= P324), V315 (≠ A327), E317 (= E329), G343 (= G359), D345 (= D361), T346 (= T362)
- binding magnesium ion: D288 (= D300), G314 (= G326), F321 (= F333), S322 (≠ D334), T325 (= T337)
P40924 Phosphoglycerate kinase; EC 2.7.2.3 from Bacillus subtilis (strain 168) (see paper)
44% identity, 96% coverage: 12:401/406 of query aligns to 5:392/394 of P40924
- S183 (≠ A189) modified: Phosphoserine
- T299 (= T305) modified: Phosphothreonine
4feyA An x-ray structure of a putative phosphogylcerate kinase with bound adp from francisella tularensis subsp. Tularensis schu s4
44% identity, 97% coverage: 10:401/406 of query aligns to 3:387/392 of 4feyA
- active site: R36 (= R43), K193 (= K203), G346 (= G360), G369 (= G383)
- binding adenosine-5'-diphosphate: G191 (= G201), S192 (≠ A202), K197 (= K207), G215 (= G225), G316 (= G326), V317 (≠ A327), E319 (= E329), D347 (= D361)
P07378 Phosphoglycerate kinase, glycosomal; Phosphoglycerate kinase C; EC 2.7.2.3 from Trypanosoma brucei brucei (see 2 papers)
40% identity, 96% coverage: 12:400/406 of query aligns to 8:416/440 of P07378
- D24 (= D28) binding (2R)-3-phosphoglycerate
- N26 (= N30) binding (2R)-3-phosphoglycerate
- R39 (= R43) binding (2R)-3-phosphoglycerate
- H62 (= H66) binding (2R)-3-phosphoglycerate
- R65 (= R69) binding (2R)-3-phosphoglycerate
- R135 (= R124) binding (2R)-3-phosphoglycerate
- R172 (= R157) binding (2R)-3-phosphoglycerate
- A218 (= A202) binding ADP
- K219 (= K203) binding (2R)-3-phosphoglycerate
- K223 (= K207) binding ADP
- A314 (≠ I298) binding ADP
- N338 (= N322) binding ADP
- E345 (= E329) binding ADP
- D377 (= D361) binding ADP; binding Mg(2+)
- S378 (≠ T362) binding ADP
16pkA Phosphoglycerate kinase from trypanosoma brucei bisubstrate analog (see paper)
40% identity, 96% coverage: 12:400/406 of query aligns to 4:412/415 of 16pkA
- active site: R35 (= R43), K215 (= K203), G372 (= G360), G395 (= G383)
- binding 1,1,5,5-tetrafluorophosphopentylphosphonic acid adenylate ester: G213 (= G201), A214 (= A202), K219 (= K207), A238 (≠ G226), Y241 (≠ N229), L311 (= L299), P336 (= P324), G338 (= G326), V339 (≠ A327), E341 (= E329), G393 (≠ A381), G394 (= G382), G395 (= G383)
13pkA Ternary complex of phosphoglycerate kinase from trypanosoma brucei (see paper)
40% identity, 96% coverage: 12:400/406 of query aligns to 4:412/415 of 13pkA
- active site: R35 (= R43), K215 (= K203), G372 (= G360), G395 (= G383)
- binding adenosine-5'-diphosphate: G213 (= G201), A214 (= A202), K219 (= K207), L311 (= L299), P336 (= P324), G338 (= G326), V339 (≠ A327), E341 (= E329), G371 (= G359), D373 (= D361), S374 (≠ T362)
6yjeA Plasmoodium vivax phosphoglycerate kinase bound to nitrofuran inhibitor from peg3350 and ammonium acetate at ph 5.5
42% identity, 95% coverage: 14:400/406 of query aligns to 10:413/416 of 6yjeA
- active site: R39 (= R43), K215 (= K203), G373 (= G360), G396 (= G383)
- binding (2~{S})-2-(5-nitrofuran-2-yl)-2,3,5,6,7,8-hexahydro-1~{H}-[1]benzothiolo[2,3-d]pyrimidin-4-one: G237 (= G225), G238 (= G226), Y241 (≠ N229), L256 (≠ I243), F291 (≠ L278), M311 (= M297), G312 (≠ I298), L313 (= L299), G340 (= G326), V341 (≠ A327)
1ltkC Crystal structure of phosphoglycerate kinase from plasmodium falciparum, in the open conformation
41% identity, 94% coverage: 18:400/406 of query aligns to 22:421/424 of 1ltkC
- active site: R47 (= R43), K223 (= K203), G381 (= G360), G404 (= G383)
- binding adenosine monophosphate: G221 (= G201), A222 (= A202), K223 (= K203), G245 (= G225), G246 (= G226), G348 (= G326), V349 (≠ A327), E351 (= E329), D382 (= D361)
P09041 Phosphoglycerate kinase 2; Phosphoglycerate kinase, testis specific; EC 2.7.2.3 from Mus musculus (Mouse) (see paper)
42% identity, 97% coverage: 7:400/406 of query aligns to 3:414/417 of P09041
- D24 (= D28) binding (2R)-3-phosphoglycerate
- N26 (= N30) binding (2R)-3-phosphoglycerate
- R39 (= R43) binding (2R)-3-phosphoglycerate
- H63 (= H66) binding (2R)-3-phosphoglycerate
- R66 (= R69) binding (2R)-3-phosphoglycerate
- R123 (= R124) binding (2R)-3-phosphoglycerate
- R171 (= R157) binding (2R)-3-phosphoglycerate
- A215 (= A202) binding ATP
- K220 (= K207) binding ATP
- G239 (= G226) binding ATP
- G313 (≠ I298) binding ATP
- E344 (= E329) binding ATP
- D375 (= D361) binding ATP
3zlbA Crystal structure of phosphoglycerate kinase from streptococcus pneumoniae (see paper)
43% identity, 96% coverage: 12:400/406 of query aligns to 5:395/398 of 3zlbA
- active site: R36 (= R43), K204 (= K203), G355 (= G360), G378 (= G383)
- binding phosphoaminophosphonic acid-adenylate ester: G202 (= G201), S203 (≠ A202), G226 (= G225), G227 (= G226), N320 (= N322), P322 (= P324), G324 (= G326), V325 (≠ A327), E327 (= E329), G354 (= G359), G355 (= G360), D356 (= D361), S357 (≠ T362)
- binding magnesium ion: D8 (= D15)
Sites not aligning to the query:
2paaA Crystal structure of phosphoglycerate kinase-2 bound to atp and 3pg (see paper)
42% identity, 96% coverage: 12:400/406 of query aligns to 4:410/413 of 2paaA
- active site: R35 (= R43), K212 (= K203), G370 (= G360), G393 (= G383)
- binding adenosine-5'-triphosphate: G210 (= G201), A211 (= A202), K216 (= K207), G235 (= G226), L253 (≠ I243), G309 (≠ I298), L310 (= L299), G334 (= G323), G337 (= G326), V338 (≠ A327), E340 (= E329), D371 (= D361)
4axxA The catalytically active fully closed conformation of human phosphoglycerate kinase in complex with adp 3-phosphoglycerate and beryllium trifluoride (see paper)
42% identity, 97% coverage: 7:400/406 of query aligns to 1:404/407 of 4axxA
- active site: R37 (= R43), K206 (= K203), G364 (= G360), G387 (= G383)
- binding adenosine-5'-diphosphate: G204 (= G201), A205 (= A202), K210 (= K207), G228 (= G225), G229 (= G226), N327 (= N322), P329 (= P324), G331 (= G326), V332 (≠ A327), E334 (= E329), G363 (= G359), G364 (= G360), D365 (= D361), T366 (= T362)
- binding beryllium trifluoride ion: K206 (= K203), K210 (= K207), G363 (= G359)
1vjcA Structure of pig muscle pgk complexed with mgatp (see paper)
42% identity, 97% coverage: 7:400/406 of query aligns to 2:413/416 of 1vjcA
2wzcA The catalytically active fully closed conformation of human phosphoglycerate kinase in complex with adp, 3pg and aluminium tetrafluoride (see paper)
42% identity, 97% coverage: 7:400/406 of query aligns to 1:402/405 of 2wzcA
- active site: R37 (= R43), K204 (= K203), G362 (= G360), G385 (= G383)
- binding adenosine-5'-diphosphate: G202 (= G201), A203 (= A202), K204 (= K203), K208 (= K207), G226 (= G225), G227 (= G226), N325 (= N322), P327 (= P324), G329 (= G326), V330 (≠ A327), E332 (= E329), G361 (= G359), D363 (= D361), T364 (= T362)
- binding tetrafluoroaluminate ion: R37 (= R43), K204 (= K203), K208 (= K207), G361 (= G359), G362 (= G360), G384 (= G382)
2wzbA The catalytically active fully closed conformation of human phosphoglycerate kinase in complex with adp, 3pg and magnesium trifluoride (see paper)
42% identity, 97% coverage: 7:400/406 of query aligns to 1:402/405 of 2wzbA
- active site: R37 (= R43), K204 (= K203), G362 (= G360), G385 (= G383)
- binding adenosine-5'-diphosphate: G202 (= G201), A203 (= A202), K204 (= K203), K208 (= K207), G226 (= G225), G227 (= G226), N325 (= N322), P327 (= P324), G329 (= G326), V330 (≠ A327), E332 (= E329), G361 (= G359), D363 (= D361), T364 (= T362)
- binding trifluoromagnesate: K204 (= K203), K208 (= K207), G361 (= G359), G384 (= G382), G385 (= G383)
2x15A The catalytically active fully closed conformation of human phosphoglycerate kinase in complex with adp and 1,3- bisphosphoglycerate
42% identity, 97% coverage: 7:400/406 of query aligns to 1:405/408 of 2x15A
- active site: R37 (= R43), K207 (= K203), G365 (= G360), G388 (= G383)
- binding adenosine-5'-diphosphate: G205 (= G201), A206 (= A202), K207 (= K203), K211 (= K207), G229 (= G225), G230 (= G226), N328 (= N322), P330 (= P324), G332 (= G326), V333 (≠ A327), E335 (= E329), G364 (= G359), G365 (= G360), D366 (= D361), T367 (= T362)
- binding adenosine-5'-triphosphate: G205 (= G201), A206 (= A202), K207 (= K203), K211 (= K207), G229 (= G225), G230 (= G226), N328 (= N322), G332 (= G326), V333 (≠ A327), E335 (= E329), G364 (= G359), G365 (= G360), D366 (= D361), T367 (= T362), G387 (= G382), G388 (= G383)
- binding 1,3-bisphosphoglyceric acid: D22 (= D28), N24 (= N30), R37 (= R43), H61 (= H66), R64 (= R69), R121 (= R124), R162 (= R157), K207 (= K203), K211 (= K207), G364 (= G359), G387 (= G382), G388 (= G383)
Query Sequence
>WP_036258903.1 NCBI__GCF_000746085.1:WP_036258903.1
MTKSAPLSPFPTLDDAVVNGKRVLVRVDLNVPMEDGRITDTTRIERILGNIREISQKGGK
VIILSHLGRPKGPERETSLKPVAVAIEHALGRMVSFASDCVGDVAKAAVRALRDGDILLL
ENTRFHPGEIKNDPSFVAALAELGDLYVNDAFSTSHRAHASTEGIARKLPAFAGRTMQHE
LEMLTSMLADPERPLAAIVGGAKVSTKLELLGNLMRRVDYLFIGGGMANTFLAASGNAIG
RSICEMQLADVARKIMADADAAHCQLVLPVDAIVAAKLEANAPSHAVDIDAVGENDMILD
IGPRTISKVVGILAAARTVVWNGPVGAFEIPPFDVGTVTIAKVAAQLTKVNALETIAGGG
DTIAALNKADAYDDFTYVSTAGGAFLEWLEGKLLPGVEALRGAKAA
Or try a new SitesBLAST search
SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory