Comparing WP_036263475.1 NCBI__GCF_000746085.1:WP_036263475.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
31% identity, 92% coverage: 8:287/306 of query aligns to 4:253/253 of 1g9xB
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
30% identity, 92% coverage: 8:287/306 of query aligns to 4:253/254 of 1g6hA
4yerA Crystal structure of an abc transporter atp-binding protein (tm_1403) from thermotoga maritima msb8 at 2.35 a resolution
29% identity, 88% coverage: 8:277/306 of query aligns to 4:225/285 of 4yerA
1ji0A Crystal structure analysis of the abc transporter from thermotoga maritima
29% identity, 92% coverage: 8:288/306 of query aligns to 6:239/240 of 1ji0A
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
24% identity, 88% coverage: 8:275/306 of query aligns to 1:223/240 of 4ymuJ
6mhzA Vanadate trapped cryo-em structure of e.Coli lptb2fg transporter (see paper)
26% identity, 91% coverage: 9:287/306 of query aligns to 3:235/235 of 6mhzA
6s8nB Cryo-em structure of lptb2fgc in complex with lipopolysaccharide (see paper)
26% identity, 91% coverage: 9:287/306 of query aligns to 3:235/238 of 6s8nB
6s8gA Cryo-em structure of lptb2fgc in complex with amp-pnp (see paper)
26% identity, 91% coverage: 9:287/306 of query aligns to 3:235/238 of 6s8gA
6mbnA Lptb e163q in complex with atp (see paper)
25% identity, 91% coverage: 9:287/306 of query aligns to 4:236/241 of 6mbnA
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
25% identity, 90% coverage: 7:280/306 of query aligns to 1:228/241 of 4u00A
3c4jA Abc protein artp in complex with atp-gamma-s
23% identity, 89% coverage: 8:280/306 of query aligns to 3:230/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
23% identity, 89% coverage: 8:280/306 of query aligns to 3:230/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
23% identity, 89% coverage: 8:280/306 of query aligns to 3:230/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
23% identity, 89% coverage: 8:280/306 of query aligns to 3:230/242 of 2oljA
6z5uK Cryo-em structure of the a. Baumannii mlabdef complex bound to appnhp (see paper)
26% identity, 88% coverage: 8:276/306 of query aligns to 2:227/253 of 6z5uK
7d0aB Acinetobacter mlafedb complex in adp-vanadate trapped vclose conformation (see paper)
26% identity, 88% coverage: 8:276/306 of query aligns to 4:229/263 of 7d0aB
7d08B Acinetobacter mlafedb complex in atp-bound vtrans1 conformation (see paper)
26% identity, 88% coverage: 8:276/306 of query aligns to 4:229/263 of 7d08B
8bmpB Cryo-em structure of the folate-specific ecf transporter complex in msp2n2 lipid nanodiscs bound to atp and adp (see paper)
26% identity, 92% coverage: 24:304/306 of query aligns to 22:260/281 of 8bmpB
Sites not aligning to the query:
5d3mB Folate ecf transporter: amppnp bound state (see paper)
26% identity, 92% coverage: 24:304/306 of query aligns to 22:260/281 of 5d3mB
Sites not aligning to the query:
8bmsB Cryo-em structure of the mutant solitary ecf module 2eq in msp2n2 lipid nanodiscs in the atpase closed and atp-bound conformation (see paper)
26% identity, 92% coverage: 24:304/306 of query aligns to 22:260/281 of 8bmsB
Sites not aligning to the query:
>WP_036263475.1 NCBI__GCF_000746085.1:WP_036263475.1
MRWNNAPLLTVEHLTMRFGGLTAVDDLDFSVGRGDITALIGPNGAGKTTVFNCITGFYKP
SAGRLALARTGSAAPEDVLALTRTGRRHAKTPSGDIFLLERMADFEIARLAGIARTFQNI
RLFAGMTLVENLIVAQHNPLMAASGFGLLGLIGSRFYRSREKQAVEKARYWLDKLDLLAR
ADDPAGALPYGAQRRLEIARAMCSRPTLLCLDEPAAGLNPRESSELNALLRSIRDEHDTS
VLLIEHDMSVVMEISDHVIVLDYGQKIADGAPADIRRDPNVIKAYLGVEDEVPATTAGIG
ACGIGA
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory