Comparing WP_036377222.1 NCBI__GCF_000015305.1:WP_036377222.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
6jixA The cyrstal structure of taurine:2-oxoglutarate aminotransferase from bifidobacterium kashiwanohense, in complex with plp and glutamate (see paper)
43% identity, 92% coverage: 31:459/465 of query aligns to 12:442/447 of 6jixA
6fyqA The crystal structure of a new transaminase from the marine bacterium virgibacillus (see paper)
35% identity, 92% coverage: 30:455/465 of query aligns to 5:435/443 of 6fyqA
6io1B Crystal structure of a novel thermostable (s)-enantioselective omega- transaminase from thermomicrobium roseum (see paper)
37% identity, 88% coverage: 32:440/465 of query aligns to 12:428/448 of 6io1B
3i5tA Crystal structure of aminotransferase prk07036 from rhodobacter sphaeroides kd131
36% identity, 89% coverage: 50:461/465 of query aligns to 27:440/444 of 3i5tA
Sites not aligning to the query:
5lhaA Amine transaminase crystal structure from an uncultivated pseudomonas species in the pmp-bound form
35% identity, 91% coverage: 35:455/465 of query aligns to 12:443/447 of 5lhaA
5lh9D Amine transaminase crystal structure from an uncultivated pseudomonas species in the plp-bound (internal aldimine) form
36% identity, 87% coverage: 50:455/465 of query aligns to 27:445/449 of 5lh9D
1szkA The structure of gamma-aminobutyrate aminotransferase mutant: e211s (see paper)
33% identity, 89% coverage: 45:458/465 of query aligns to 20:423/425 of 1szkA
Sites not aligning to the query:
P22256 4-aminobutyrate aminotransferase GabT; 5-aminovalerate transaminase; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; Glutamate:succinic semialdehyde transaminase; L-AIBAT; EC 2.6.1.19; EC 2.6.1.48 from Escherichia coli (strain K12) (see 2 papers)
33% identity, 89% coverage: 45:458/465 of query aligns to 21:424/426 of P22256
1sffA Structure of gamma-aminobutyrate aminotransferase complex with aminooxyacetate (see paper)
33% identity, 89% coverage: 45:458/465 of query aligns to 20:423/425 of 1sffA
Sites not aligning to the query:
1sf2A Structure of e. Coli gamma-aminobutyrate aminotransferase (see paper)
33% identity, 89% coverage: 45:458/465 of query aligns to 20:423/425 of 1sf2A
Sites not aligning to the query:
6s54A Transaminase from pseudomonas fluorescens (see paper)
32% identity, 91% coverage: 35:455/465 of query aligns to 18:448/453 of 6s54A
Q94CE5 Gamma-aminobutyrate transaminase POP2, mitochondrial; AtGABA-T; Gamma-aminobutyric acid aminotransferase 1; Protein HEXENAL RESPONSE 1; Protein POLLEN-PISTIL INCOMPATIBILITY 2; AtPOP2; EC 2.6.1.96 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
32% identity, 90% coverage: 40:459/465 of query aligns to 63:492/504 of Q94CE5
3gjuA Crystal structure of a putative aminotransferase (mll7127) from mesorhizobium loti maff303099 at 1.55 a resolution
33% identity, 89% coverage: 32:444/465 of query aligns to 13:442/458 of 3gjuA
5kr6B Directed evolution of transaminases by ancestral reconstruction. Using old proteins for new chemistries
33% identity, 92% coverage: 30:459/465 of query aligns to 11:458/460 of 5kr6B
7ypmA Crystal structure of transaminase cc1012 complexed with plp and l- alanine (see paper)
32% identity, 92% coverage: 30:459/465 of query aligns to 5:448/454 of 7ypmA
7qx0B Transaminase structure of plurienzyme (tr2e2) in complex with plp (see paper)
32% identity, 92% coverage: 31:459/465 of query aligns to 8:436/443 of 7qx0B
7ypnD Crystal structure of transaminase cc1012 mutant m9 complexed with plp (see paper)
31% identity, 94% coverage: 24:459/465 of query aligns to 2:448/455 of 7ypnD
7qx3A Structure of the transaminase tr2e2 with eos (see paper)
33% identity, 88% coverage: 51:459/465 of query aligns to 4:415/422 of 7qx3A
3fcrA Crystal structure of putative aminotransferase (yp_614685.1) from silicibacter sp. Tm1040 at 1.80 a resolution
31% identity, 90% coverage: 30:446/465 of query aligns to 10:444/458 of 3fcrA
5kquC Directed evolution of transaminases by ancestral reconstruction. Using old proteins for new chemistries
32% identity, 92% coverage: 29:456/465 of query aligns to 8:452/459 of 5kquC
>WP_036377222.1 NCBI__GCF_000015305.1:WP_036377222.1
MSYETLEETGLLPNGLTVEAARAEAARAYELDRAHVFHSWSAQAEISPMTLVAADGCHVW
DGQGNKLLDFSSMLVNTNIGHQHPKVVAAIAQQAAKLCTVAPQHANAARSEAARLIAERT
PGELNRIFFTNGGADAVEHAVRMARLHTGRSKVLSRYRSYHGGTDTAINLTGDPRRWPND
HGTAGIVHFFGPFLYRSQFHAGTEAEESERALAHLHDTIRMEGPNTIAAIILESIPGTAG
IMVPPPGYMAGVRALCDEYGIVFIADEVMAGFGRSGKWFSINHFDVVPDLLTFAKGVNSG
YVPLGGVAISPAIAETFAHRAYPGGLTYSGHPLATAAAVATINTMAEDGIVENAARVGAE
VIGPGLRELAARHRSVGEVRGAGVFWAVELVADQTTREPLAPYGSSSAAMNSVIAECKKL
GLLPFANYNRIHVVPPCTITDEQAREGLAILDKALDVADAATENA
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory