SitesBLAST

SitesBLAST – Find functional sites

SitesBLAST

Comparing WP_037454055.1 NCBI__GCF_000576635.1:WP_037454055.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 20 (the maximum) hits to proteins with known functional sites (download)

5v6qB Crystal structure of NADPH-dependent glyoxylate/hydroxypyruvate reductase smc04462 (smghrb) from sinorhizobium meliloti in complex with NADP and malonate (see paper)
53% identity, 97% coverage: 1:315/325 of query aligns to 1:313/319 of 5v6qB

query
sites
5v6qB

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active site: L96 (= L100), R230 (= R232), D254 (= D256), E259 (= E261), H277 (= H279)
binding nadp nicotinamide-adenine-dinucleotide phosphate: V72 (= V76), V100 (= V104), F148 (≠ L150), L150 (= L152), G151 (= G153), R152 (= R154), I153 (= I155), T172 (≠ G174), R173 (= R175), V201 (≠ L203), P202 (= P204), S206 (≠ A208), T207 (= T209), V228 (= V230), G229 (= G231), R230 (= R232), H277 (= H279), A279 (= A281)

5v7nA Crystal structure of NADPH-dependent glyoxylate/hydroxypyruvate reductase smc04462 (smghrb) from sinorhizobium meliloti in complex with NADP and 2-keto-d-gluconic acid (see paper)
53% identity, 97% coverage: 2:315/325 of query aligns to 1:312/319 of 5v7nA

query
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5v7nA

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active site: L95 (= L100), R229 (= R232), D253 (= D256), E258 (= E261), H276 (= H279)
binding 2-keto-D-gluconic acid: G70 (= G75), V71 (= V76), G72 (= G77), R229 (= R232), H276 (= H279), S279 (= S282), R285 (= R288)
binding nadp nicotinamide-adenine-dinucleotide phosphate: V71 (= V76), V99 (= V104), L149 (= L152), G150 (= G153), R151 (= R154), I152 (= I155), T171 (≠ G174), R172 (= R175), V200 (≠ L203), P201 (= P204), S205 (≠ A208), T206 (= T209), V227 (= V230), G228 (= G231), R229 (= R232), H276 (= H279), A278 (= A281)

5v7gA Crystal structure of NADPH-dependent glyoxylate/hydroxypyruvate reductase smc04462 (smghrb) from sinorhizobium meliloti in complex with NADPH and oxalate (see paper)
53% identity, 96% coverage: 3:315/325 of query aligns to 1:311/317 of 5v7gA

query
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5v7gA

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active site: L94 (= L100), R228 (= R232), D252 (= D256), E257 (= E261), H275 (= H279)
binding nadph dihydro-nicotinamide-adenine-dinucleotide phosphate: V70 (= V76), V98 (= V104), F146 (≠ L150), L148 (= L152), G149 (= G153), R150 (= R154), I151 (= I155), T170 (≠ G174), R171 (= R175), V199 (≠ L203), P200 (= P204), S204 (≠ A208), T205 (= T209), V226 (= V230), G227 (= G231), R228 (= R232), H275 (= H279), A277 (= A281)
binding oxalate ion: G69 (= G75), V70 (= V76), G71 (= G77), R228 (= R232), H275 (= H279)

5j23A Crystal structure of NADPH-dependent glyoxylate/hydroxypyruvate reductase smc04462 (smghrb) from sinorhizobium meliloti in complex with 2'-phospho-adp-ribose (see paper)
53% identity, 96% coverage: 3:315/325 of query aligns to 1:311/318 of 5j23A

query
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5j23A

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E

L

K

K

L

A

I

V

G

N

S

A

A

D

V

V

F

L

E

S

A

A

L

L

G

G

S

P

D

K

G

G

V

V

F

L

V

I

N

N

V

V

G

G

R
|
R

G

G

S

S

V

T

V

V

D

D

E

E

A

A

L

L

I

V

E

T

A

A

L

L

R

Q

S

N

K

G

T

T

I

I

L

A

G

G

A

A

G

G

I

L

D
|
D

V

V

F

F

A

E

D

N

E
|
E

P

P

N

N

V

V

P

P

A

E

E

A

L

L

I

L

A

S

R

F

E

P

N

N

A

V

V

S

L

L

P

P

H
|
H

V

V

A

A

S

S

A

A

T

S

V

V

H

V

T

T

R

R

N

N

A

A

M

M

G

S

Q

D

L

L

V

V

D

D

N

N

L

L

V

K

S

A

W

W

F

F

D

S

G

T

R

G

G

E

A

A

L

L

T

T

P

P

V

V

P

A

E

E

T

T

active site: L94 (= L100), R228 (= R232), D252 (= D256), E257 (= E261), H275 (= H279)
binding [(2r,3r,4r,5r)-5-(6-amino-9h-purin-9-yl)-3-hydroxy-4-(phosphonooxy)tetrahydrofuran-2-yl]methyl [(2r,3s,4r,5r)-3,4,5-trihydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate: V70 (= V76), L148 (= L152), G149 (= G153), R150 (= R154), I151 (= I155), T170 (≠ G174), R171 (= R175), P200 (= P204), S204 (≠ A208), T205 (= T209), R228 (= R232)

3bazA Structure of hydroxyphenylpyruvate reductase from coleus blumei in complex with NADP+ (see paper)
46% identity, 94% coverage: 6:312/325 of query aligns to 4:310/311 of 3bazA

query
sites
3bazA

I

V

L

L

Q

M

I

M

A

C

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P

M

M

L

S

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T

I

Y

V

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T

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D

Q

Q

E

L

L

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D

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K

M

R

F

F

T

K

L

L

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F

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R

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Y

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A

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P

D

A

K

Q

D

R

A

D

W

F

L

L

T

A

E

L

H

Q

G

A

A

E

R

S

I

I

R

R

G

A

V

V

A

V

A

G

G

N

G

S

H

N

A

A

G

G

V

A

D

D

E

A

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E

L

L

M

I

A

D

R

A

L

L

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P

T

K

L

L

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I

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G

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A

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F

F

G

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V
|
V

G

G

Y

L

D

D

Q

K

I

V

D

D

A

L

K

I

W

K

A

C

G

E

E

E

H

K

G

G

I

V

V

R

V

V

T

T

N

N

T

T

P

P

D

D

V

V

L
|
L

T

T

D

D

E

D

V

V

A

A

D

D

L

L

T

A

I

I

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G

L

L

L

I

L

L

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A

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V

L

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R

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R

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I

P

C

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E

A

C

E

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H

Y

L

V

R

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E

R

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G

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A

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W

P

K

A

F

G

G

N

D

Y

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P

K

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L

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T

A

T

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K

L

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R

S

G

G

R

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K

R

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V

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G

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|
G

L
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L

G
|
G

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R

I
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I

G

G

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L

A

A

I

V

A

A

K

E

R

R

L

A

Q

E

A

A

F

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D

L

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P

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I

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S

Y

Y

Y

F

G
x
S

R
|
R

H
x
S

K

K

Q

K

D

P

G

N

V

T

E

N

F

Y

P

T

Y

Y

V

Y

A

G

D

S

P

V

V

V

E

E

L

L

A

A

R

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Q

N

V

S

D

D

I

I

L

L

I

V

S

V

V

A

L
x
C

P
|
P

G

L

G

T

A

P

A

E

T
|
T

E

T

K

H

L

I

I

I

G

N

S

R

A

E

V

V

F

I

E

D

A

A

L

L

G

G

S

P

D

K

G

G

V

V

F

L

V

I

N

N

V
x
I

G
|
G

R
|
R

G

G

S

P

V

H

V

V

D

D

E

E

A

P

A

E

L

L

I

V

E

S

A

A

L

L

R

V

S

E

K

G

T

R

I

L

L

G

G

G

A
|
A

G

G

I

L

D
|
D

V

V

F

F

A

E

D

R

E
|
E

P

P

N

E

V

V

P

P

A

E

E

K

L

L

I

F

A

G

R

L

E

E

N

N

A

V

V

V

L

L

P

P

H
|
H

V

V

A
x
G

S

S

A

G

T

T

V

V

H

E

T

T

R

R

N

K

A

V

M

M

G

A

Q

D

L

L

V

V

D

G

N

N

L

L

V

E

S

A

W

H

F

F

D

S

G

G

R

K

G

P

A

L

L

L

T

T

P

P

V

V

active site: L98 (= L100), R230 (= R232), A251 (= A253), D254 (= D256), E259 (= E261), H277 (= H279)
binding nadp nicotinamide-adenine-dinucleotide phosphate: V74 (= V76), G149 (= G151), L150 (= L152), G151 (= G153), R152 (= R154), I153 (= I155), S172 (≠ G174), R173 (= R175), S174 (≠ H176), C201 (≠ L203), P202 (= P204), T207 (= T209), I228 (≠ V230), G229 (= G231), R230 (= R232), D254 (= D256), H277 (= H279), G279 (≠ A281)

Q65CJ7 Hydroxyphenylpyruvate reductase; HPPR; EC 1.1.1.237 from Plectranthus scutellarioides (Coleus) (Solenostemon scutellarioides) (see paper)
46% identity, 94% coverage: 6:312/325 of query aligns to 6:312/313 of Q65CJ7

query
sites
Q65CJ7

I

V

L

L

Q

M

I

M

A

C

P

P

M

M

L

S

P

T

I

Y

V

L

T

E

D

Q

Q

E

L

L

D

D

K

K

M

R

F

F

T

K

L

L

H

F

R

R

L

Y

W

W

E

T

A

Q

S

P

D

A

K

Q

D

R

A

D

W

F

L

L

T

A

E

L

H

Q

G

A

A

E

R

S

I

I

R

R

G

A

V

V

A

V

A

G

G

N

G

S

H

N

A

A

G

G

V

A

D

D

E

A

S

E

L

L

M

I

A

D

R

A

L

L

P

P

T

K

L

L

E

E

I

I

I

V

G

S

A

S

F

F

G

S

V

V

G

G

Y

L

D

D

Q

K

I

V

D

D

A

L

K

I

W

K

A

C

G

E

E

E

H

K

G

G

I

V

V

R

V

V

T

T

N

N

T

T

P

P

D

D

V

V

L

L

T

T

D

D

E

D

V

V

A

A

D

D

L

L

T

A

I

I

G

G

L

L

L

I

L

L

S

A

T

V

V

L

R

R

Q

R

I

I

P

C

G

E

A

C

E

D

R

K

H

Y

L

V

R

R

E

R

G

G

K

A

W

W

P

K

A

F

G

G

N

D

Y

F

P

K

L

L

T

T

A

T

S

K

L

F

R

S

G

G

R

K

K

R

V

V

G

G

I

I

L

I

G

G

L
|
L

G
|
G

R
|
R

I
|
I

G

G

K

L

A

A

I

V

A

A

K

E

R

R

L

A

Q

E

A

A

F

F

G

D

L

C

P

P

I

I

S

S

Y

Y

Y

F

G
x
S

R
|
R

H
x
S

K

K

Q

K

D

P

G

N

V

T

E

N

F

Y

P

T

Y

Y

V

Y

A

G

D

S

P

V

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V

E

E

L

L

A

A

R

S

Q

N

V

S

D

D

I

I

L

L

I

V

S

V

V

A

L

C

P

P

G

L

G

T

A

P

A

E

T

T

E

T

K

H

L

I

I

I

G

N

S

R

A

E

V

V

F

I

E

D

A

A

L

L

G

G

S

P

D

K

G

G

V

V

F

L

V

I

N

N

V
x
I

G

G

R

R

G

G

S

P

V

H

V

V

D

D

E

E

A

P

A

E

L

L

I

V

E

S

A

A

L

L

R

V

S

E

K

G

T

R

I

L

L

G

G

G

A

A

G

G

I

L

D
|
D

V

V

F

F

A

E

D

R

E

E

P

P

N

E

V

V

P

P

A

E

E

K

L

L

I

F

A

G

R

L

E

E

N

N

A

V

V

V

L

L

P

P

H

H

V

V

A

G

S

S

A

G

T

T

V

V

H

E

T

T

R

R

N

K

A

V

M

M

G

A

Q

D

L

L

V

V

D

G

N

N

L

L

V

E

S

A

W

H

F

F

D

S

G

G

R

K

G

P

A

L

L

L

T

T

P

P

V

V

LGRI 152:155 (= LGRI 152:155) binding NADP(+)
SRS 174:176 (≠ GRH 174:176) binding NADP(+)
I230 (≠ V230) binding NADP(+)
D256 (= D256) binding NADP(+)

5aovA Ternary crystal structure of pyrococcus furiosus glyoxylate hydroxypyruvate reductase in presence of glyoxylate (see paper)
38% identity, 78% coverage: 57:311/325 of query aligns to 57:318/334 of 5aovA

query
sites
5aovA

V

I

D

D

E

Q

S

E

L

V

M

F

A

E

R

N

L

A

P

P

T

R

L

L

E

R

I

I

I

V

G

A

A

N

F
x
Y

G
x
A

V
|
V

G
|
G

Y

Y

D

D

Q

N

I

I

D

D

A

V

K

E

W

E

A

A

G

T

E

R

H

R

G

G

I

I

V

Y

V

V

T

T

N

N

T

T

P

P

D

D

V

V

L
|
L

T

T

D

N

E

A

V
x
T

A

A

D

D

L

H

T

A

I

F

G

A

L

L

S

A

T

T

V

A

R

R

Q

H

I

V

P

V

G

K

A

G

E

D

R

K

H

F

L

V

R

R

E

S

G

G

K

E

W

W

P

K

A

R

G

K

-

G

-

I

-

A

-

W

-

H

-

P

N

K

Y

W

P

F

L

L

T

G

A

Y

S

E

L

L

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Y

G

G

R

K

K

T

V

I

G

G

I

I

L

V

G

G

L
x
F

G
|
G

R
|
R

I
|
I

G

G

K

Q

A

A

I

I

A

A

K

R

R

R

L

A

Q

K

A

G

F

F

G

N

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L

Y

Y

G
x
S

R
|
R

H

T

K

R

Q

K

D

S

G

Q

V

A

E

E

F

K

P

E

Y

L

V

G

A

A

D

E

-

Y

-

R

P

P

V

L

E

E

-

E

L

V

A

L

R

K

Q

E

V

S

D

D

I

F

L

V

I

I

S

L

V
x
A

L
x
V

P
|
P

G

L

G

T

A

K

A

E

T
|
T

E

M

K

Y

L

M

I

I

G

N

S

E

A

E

V

R

F

L

E

K

A

L

L

M

G

K

S

P

D

T

G

A

V

I

F

L

V

V

N

N

V
x
I

G
x
A

R
|
R

G

G

S

K

V

V

D

D

E

T

A

K

A

A

L

L

I

I

E

K

A

A

L

L

R

K

S

E

K

G

T

W

I

I

L

A

G

G

A

A

G

G

I

L

D
|
D

V

V

F

F

A

E

D

E

E
|
E

P

P

N

Y

V

Y

P

N

A

E

E

E

L

L

I

F

A

S

R

L

E

D

N

N

A

V

V

V

L

L

L

T

P

P

H
|
H

V

I

A
x
G

S

S

A

A

T

T

V

F

H

E

T

A

R

R

N

E

A

A

M

M

G

A

Q

E

L

L

V

V

V

A

D

R

N

N

L

L

V

I

S

A

W

F

F

-

D

-

G

K

R

R

G

G

A

E

L

I

T

P

P

P

active site: L100 (= L100), R241 (= R232), D265 (= D256), E270 (= E261), H288 (= H279)
binding glyoxylic acid: Y74 (≠ F74), A75 (≠ G75), V76 (= V76), G77 (= G77), R241 (= R232), H288 (= H279)
binding nadp nicotinamide-adenine-dinucleotide phosphate: V76 (= V76), T104 (≠ V104), F158 (≠ L152), G159 (= G153), R160 (= R154), I161 (= I155), S180 (≠ G174), R181 (= R175), A211 (≠ V202), V212 (≠ L203), P213 (= P204), T218 (= T209), I239 (≠ V230), A240 (≠ G231), R241 (= R232), H288 (= H279), G290 (≠ A281)

Sites not aligning to the query:

binding glyoxylic acid: 52, 53, 53

6biiA Crystal structure of pyrococcus yayanosii glyoxylate hydroxypyruvate reductase in complex with NADP and malonate (re-refinement of 5aow) (see paper)
40% identity, 77% coverage: 57:305/325 of query aligns to 56:313/332 of 6biiA

query
sites
6biiA

V

I

D

D

E

R

S

E

L

V

M

F

A

D

R

A

L

A

P

P

T

R

L

L

E

R

I

I

I

V

G

A

A

N

F

Y

G

A

V
|
V

G

G

Y

Y

D

D

Q

N

I

I

D

D

A

I

K

E

W

E

A

A

G

T

E

K

H

R

G

G

I

I

V

Y

V

V

T

T

N

N

T

T

P

P

D

D

V

V

L
|
L

T

T

D

D

E

A

V
x
T

A

A

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D

L

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A

L

L

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A

T

A

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A

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A

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F

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W

W

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K

A

R

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R

N

G

-

I

-

A

-

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Y

H

P

P

-

K

-

M

-

F

L

L

T

G

A

Y

S

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G

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G

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I

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x
F

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|
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R

I
|
I

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A

A

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I

A

A

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K

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R

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A

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K

A

G

F

F

G

G

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M

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R

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L

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Y

T

G
x
A

R
|
R

-
x
S

-

R

-
x
K

-

P

-

E

-

A

H

E

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K

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G

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A

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K

Y

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L

A

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-

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-

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F

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x
V

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P

G

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K

A
x
E

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T

E

Y

K

H

L

M

I

I

G

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S

E

A

E

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F

L

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R

A

L

L

M

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K

S

P

D

T

G

A

V

V

F

L

V

V

N

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|
V

G
x
A

R
|
R

G

G

S

K

V

V

D

D

E

T

A

K

A

A

L

L

I

I

E

R

A

A

L

L

R

K

S

E

K

G

T

W

I

I

L

A

G

A

A

A

G

G

I

L

D
|
D

V

V

F

F

A

E

D

E

E
|
E

P

P

N

Y

V

Y

P

D

A

E

E

E

L

L

I

F

A

A

R

L

E

D

N

N

A

V

V

V

L

L

L

T

P

P

H
|
H

V

I

A
x
G

S

S

A

A

T

T

V

F

H

G

T

A

R

R

N

E

A

G

M

M

G

A

Q

E

L

L

V

V

V

A

D

K

N

N

L

L

V

I

S

A

W

F

F

K

D

N

G

G

active site: L99 (= L100), R240 (= R232), D264 (= D256), E269 (= E261), H287 (= H279)
binding nadp nicotinamide-adenine-dinucleotide phosphate: V75 (= V76), T103 (≠ V104), G156 (= G151), F157 (≠ L152), G158 (= G153), R159 (= R154), I160 (= I155), A179 (≠ G174), R180 (= R175), S181 (vs. gap), K183 (vs. gap), V211 (≠ L203), P212 (= P204), E216 (≠ A208), T217 (= T209), V238 (= V230), A239 (≠ G231), R240 (= R232), D264 (= D256), H287 (= H279), G289 (≠ A281)

2gcgA Ternary crystal structure of human glyoxylate reductase/hydroxypyruvate reductase (see paper)
39% identity, 76% coverage: 67:313/325 of query aligns to 70:319/324 of 2gcgA

query
sites
2gcgA

T

N

L

L

E

K

I

V

I

I

G

S

A

T

F

M

G
x
S

V
|
V

G
|
G

Y

I

D

D

Q

H

I

L

D

A

A

L

K

D

W

E

A

I

G

K

E

K

H

R

G

G

I

I

V

R

V

V

T

G

N

Y

T

T

P

P

D

D

V

V

L
|
L

T

T

D

D

E

T

V
x
T

A

A

D

E

L

L

T

A

I

V

G

S

L

L

S

T

T

T

V

C

R

R

Q

R

I

L

P

P

G

E

A

A

E

I

R

E

H

E

L

V

R

K

E

N

G

G

K

G

W

W

P

T

A

S

-

W

-

K

-

P

-

L

-

W

-

L

G

C

N

G

Y

Y

P

G

L

L

T

T

A

Q

S

S

L

-

R

-

G

-

R

-

K

T

V

V

G

G

I

I

L

I

G
|
G

L

L

G
|
G

R

R

I
|
I

G

G

K

Q

A

A

I

I

A

A

K

R

R

R

L

L

Q

K

A

P

F

F

G

G

L

V

P

Q

-

R

I

F

S

L

Y

Y

Y

T

G
|
G

R
|
R

H

Q

-

P

-
x
R

K

P

Q

E

D

E

G

A

V

A

E

E

F

F

P

Q

-

A

-

E

Y

F

V

V

A

S

D

T

P

P

V

-

E

E

L

L

A

A

R

A

Q

Q

V

S

D

D

I

F

L

I

I

V

S

V

V

A

L
x
C

P
x
S

G

L

G

T

A

P

A

A

T
|
T

E

E

K

G

L

L

I

C

G

N

S

K

A

D

V

F

F

F

E

Q

A

K

L

M

G

K

S

E

D

T

G

A

V

V

F

F

V

I

N

N

V
x
I

G

S

R
|
R

G

G

S

D

V

V

D

N

E

Q

A

D

L

L

I

Y

E

Q

A

A

L

L

R

A

S

S

K

G

T

K

I

I

L

A

G

A

A

A

G

G

I

L

D
|
D

V

V

F

T

A

S

D

P

E
|
E

P

P

-

L

-

P

-

T

N

N

V

H

P

P

A

-

E

-

L

L

I

L

A

T

R

L

E

K

N

N

A

C

V

V

L

I

L

L

P

P

H
|
H

V

I

A
x
G

S

S

A

A

T

T

V

H

H

R

T

T

R

R

N

N

A

T

M

M

G

S

Q

L

L

L

V

A

D

N

N

N

L

L

V

L

S

A

W

G

F

L

D

R

G

G

R

E

G

-

A

-

L

-

T

-

P

P

V

M

P

P

active site: L103 (= L100), R241 (= R232), D265 (= D256), E270 (= E261), H289 (= H279)
binding (2r)-2,3-dihydroxypropanoic acid: S78 (≠ G75), V79 (= V76), G80 (= G77), R241 (= R232), H289 (= H279)
binding nadph dihydro-nicotinamide-adenine-dinucleotide phosphate: V79 (= V76), T107 (≠ V104), G156 (= G151), G158 (= G153), I160 (= I155), G180 (= G174), R181 (= R175), R184 (vs. gap), C212 (≠ L203), S213 (≠ P204), T218 (= T209), I239 (≠ V230), R241 (= R232), D265 (= D256), H289 (= H279), G291 (≠ A281)

Sites not aligning to the query:

binding (2r)-2,3-dihydroxypropanoic acid: 55

Q9UBQ7 Glyoxylate reductase/hydroxypyruvate reductase; EC 1.1.1.79; EC 1.1.1.81 from Homo sapiens (Human) (see paper)
40% identity, 74% coverage: 67:305/325 of query aligns to 74:319/328 of Q9UBQ7

query
sites
Q9UBQ7

T

N

L

L

E

K

I

V

I

I

G

S

A

T

F

M

G

S

V
|
V

G
|
G

Y

I

D

D

Q

H

I

L

D

A

A

L

K

D

W

E

A

I

G

K

E

K

H

R

G

G

I

I

V

R

V

V

T

G

N

Y

T

T

P

P

D

D

V

V

L

L

T

T

D

D

E

T

V

T

A

A

D

E

L

L

T

A

I

V

G

S

L

L

S

T

T

T

V

C

R

R

Q

R

I

L

P

P

G

E

A

A

E

I

R

E

H

E

L

V

R

K

E

N

G

G

K

G

W

W

P

T

A

S

-

W

-

K

-

P

-

L

-

W

-

L

G

C

N

G

Y

Y

P

G

L

L

T

T

A

Q

S

S

L

-

R

-

G

-

R

-

K

T

V

V

G

G

I

I

L

I

G

G

L

L

G
|
G

R
|
R

I
|
I

G

G

K

Q

A

A

I

I

A

A

K

R

R

R

L

L

Q

K

A

P

F

F

G

G

L

V

P

Q

-

R

I

F

S

L

Y

Y

Y

T

G

G

R
|
R

H
x
Q

-
x
P

-
x
R

K

P

Q

E

D

E

G

A

V

A

E

E

F

F

P

Q

-

A

-

E

Y

F

V

V

A

S

D

T

P

P

V

-

E

E

L

L

A

A

R

A

Q

Q

V

S

D

D

I

F

L

I

I

V

S

V

V

A

L

C

P
x
S

G

L

G

T

A

P

A

A

T

T

E

E

K

G

L

L

I

C

G

N

S

K

A

D

V

F

F

F

E

Q

A

K

L

M

G

K

S

E

D

T

G

A

V

V

F

F

V

I

N

N

V
x
I

G

S

R
|
R

G

G

S

D

V

V

D

N

E

Q

A

D

L

L

I

Y

E

Q

A

A

L

L

R

A

S

S

K

G

T

K

I

I

L

A

G

A

A

A

G

G

I

L

D
|
D

V

V

F

T

A

S

D

P

E

E

P

P

-

L

-

P

-

T

N

N

V

H

P

P

A

-

E

-

L

L

I

L

A

T

R

L

E

K

N

N

A

C

V

V

L

I

L

L

P

P

H
|
H

V
x
I

A
x
G

S
|
S

A

A

T

T

V

H

H

R

T

T

R

R

N

N

A

T

M

M

G

S

Q

L

L

L

V

A

D

N

N

N

L

L

V

L

S

A

W

G

F

L

D

R

G

G

VG 83:84 (= VG 76:77) binding substrate
GRI 162:164 (= GRI 153:155) binding NADP(+)
RQPR 185:188 (≠ RH-- 175:176) binding NADP(+)
S217 (≠ P204) binding NADP(+)
I243 (≠ V230) binding NADP(+)
R245 (= R232) binding substrate
D269 (= D256) binding substrate
HIGS 293:296 (≠ HVAS 279:282) binding substrate
G295 (≠ A281) binding NADP(+)

2dbqA Crystal structure of glyoxylate reductase (ph0597) from pyrococcus horikoshii ot3, complexed with NADP (i41) (see paper)
39% identity, 78% coverage: 57:311/325 of query aligns to 57:318/333 of 2dbqA

query
sites
2dbqA

V

I

D

D

E

K

S

E

L

V

M

F

A

E

R

N

L

A

P

P

T

K

L

L

E

R

I

I

I

V

G

A

A

N

F

Y

G

A

V
|
V

G

G

Y

Y

D

D

Q

N

I

I

D

D

A

I

K

E

W

E

A

A

G

T

E

K

H

R

G

G

I

I

V

Y

V

V

T

T

N

N

T

T

P

P

D

D

V

V

L
|
L

T

T

D

D

E

A

V
x
T

A

A

D

D

L

L

T

A

I

F

G

A

L

L

S

A

T

T

V

A

R

R

Q

H

I

V

P

V

G

K

A

G

E

D

R

R

H

F

L

V

R

R

E

S

G

G

K

E

W

W

P

K

A

K

G

R

-

G

-

V

-

A

-

W

-

H

-

P

N

K

Y

W

P

F

L

L

T

G

A

Y

S

D

L

V

R

Y

G

G

R

K

K

T

V

I

G

G

I

I

L

I

G

G

L
|
L

G
|
G

R
|
R

I
|
I

G

G

K

Q

A

A

I

I

A

A

K

K

R

R

L

A

Q

K

A

G

F

F

G

N

L

M

P

R

I

I

S

L

Y

Y

G
x
S

R
|
R

H
x
T

K

R

Q

K

D

E

G

E

V

V

E

E

F

R

P

E

Y

L

V

N

A

A

D

E

-

F

-

K

P

P

V

L

E

E

-

D

L

L

A

L

R

R

Q

E

V

S

D

D

I

F

L

V

I

V

S

L

V
x
A

L
x
V

P
|
P

G

L

G

T

A

R

A

E

T
|
T

E

Y

K

H

L

L

I

I

G

N

S

E

A

E

V

R

F

L

E

K

A

L

L

M

G

K

S

K

D

T

G

A

V

I

F

L

V

I

N

N

V
x
I

G
x
A

R
|
R

G

G

S

K

V

V

D

D

E

T

A

N

A

A

L

L

I

V

E

K

A

A

L

L

R

K

S

E

K

G

T

W

I

I

L

A

G

G

A

A

G

G

I

L

D
|
D

V

V

F

F

A

E

D

E

E
|
E

P

P

N

Y

V

Y

P

N

A

E

E

E

L

L

I

F

A

K

R

L

E

D

N

N

A

V

V

V

L

L

L

T

P

P

H
|
H

V

I

A
x
G

S

S

A

A

T

S

V

F

H

G

T

A

R

R

N

E

A

G

M

M

G

A

Q

E

L

L

V

V

V

A

D

K

N

N

L

L

V

I

S

A

W

F

F

-

D

-

G

K

R

R

G

G

A

E

L

I

T

P

P

P

active site: L100 (= L100), R241 (= R232), D265 (= D256), E270 (= E261), H288 (= H279)
binding nadp nicotinamide-adenine-dinucleotide phosphate: V76 (= V76), T104 (≠ V104), L158 (= L152), G159 (= G153), R160 (= R154), I161 (= I155), S180 (≠ G174), R181 (= R175), T182 (≠ H176), A211 (≠ V202), V212 (≠ L203), P213 (= P204), T218 (= T209), I239 (≠ V230), A240 (≠ G231), R241 (= R232), D265 (= D256), H288 (= H279), G290 (≠ A281)

O58320 Glyoxylate reductase; EC 1.1.1.26 from Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
39% identity, 78% coverage: 57:311/325 of query aligns to 57:318/334 of O58320

query
sites
O58320

V

I

D

D

E

K

S

E

L

V

M

F

A

E

R

N

L

A

P

P

T

K

L

L

E

R

I

I

I

V

G

A

A

N

F

Y

G

A

V

V

G

G

Y

Y

D

D

Q

N

I

I

D

D

A

I

K

E

W

E

A

A

G

T

E

K

H

R

G

G

I

I

V

Y

V

V

T

T

N

N

T

T

P

P

D

D

V

V

L

L

T

T

D

D

E

A

V

T

A

A

D

D

L

L

T

A

I

F

G

A

L

L

S

A

T

T

V

A

R

R

Q

H

I

V

P

V

G

K

A

G

E

D

R

R

H

F

L

V

R

R

E

S

G

G

K

E

W

W

P

K

A

K

G

R

-

G

-

V

-

A

-

W

-

H

-

P

N

K

Y

W

P

F

L

L

T

G

A

Y

S

D

L

V

R

Y

G

G

R

K

K

T

V

I

G

G

I

I

L

I

G

G

L
|
L

G
|
G

R
|
R

I
|
I

G

G

K

Q

A

A

I

I

A

A

K

K

R

R

L

A

Q

K

A

G

F

F

G

N

L

M

P

R

I

I

S

L

Y

Y

G
x
S

R
|
R

H
x
T

K

R

Q

K

D

E

G

E

V

V

E

E

F

R

P

E

Y

L

V

N

A

A

D

E

-

F

-

K

P

P

V

L

E

E

-

D

L

L

A

L

R

R

Q

E

V

S

D

D

I

F

L

V

I

V

S

L

V

A

L

V

P

P

G

L

G

T

A

R

A

E

T

T

E

Y

K

H

L

L

I

I

G

N

S

E

A

E

V

R

F

L

E

K

A

L

L

M

G

K

S

K

D

T

G

A

V

I

F

L

V

I

N

N

V
x
I

G
x
A

R
|
R

G

G

S

K

V

V

D

D

E

T

A

N

A

A

L

L

I

V

E

K

A

A

L

L

R

K

S

E

K

G

T

W

I

I

L

A

G

G

A

A

G

G

I

L

D

D

V

V

F

F

A

E

D

E

E

E

P

P

N

Y

V

Y

P

N

A

E

E

E

L

L

I

F

A

K

R

L

E

D

N

N

A

V

V

V

L

L

L

T

P

P

H
|
H

V
x
I

A
x
G

S

S

A

A

T

S

V

F

H

G

T

A

R

R

N

E

A

G

M

M

G

A

Q

E

L

L

V

V

V

A

D

K

N

N

L

L

V

I

S

A

W

F

F

-

D

-

G

K

R

R

G

G

A

E

L

I

T

P

P

P

LGRI 158:161 (= LGRI 152:155) binding NADP(+)
SRT 180:182 (≠ GRH 174:176) binding NADP(+)
IAR 239:241 (≠ VGR 230:232) binding NADP(+)
HIG 288:290 (≠ HVA 279:281) binding NADP(+)

O43175 D-3-phosphoglycerate dehydrogenase; 3-PGDH; 2-oxoglutarate reductase; Malate dehydrogenase; EC 1.1.1.95; EC 1.1.1.399; EC 1.1.1.37 from Homo sapiens (Human) (see 3 papers)
33% identity, 77% coverage: 68:317/325 of query aligns to 70:320/533 of O43175

query
sites
O43175

L

L

E

Q

I

V

G

G

A

R

F

A

G

G

V
x
T

G

G

Y

V

D

D

Q

N

I

V

D

D

A

L

K

E

W

A

A

A

G

T

E

R

H

K

G

G

I

I

V

L

V

V

T

M

N

N

T

T

P

P

D

N

V

G

L

N

T

S

D

L

E

S

V

A

A

A

D

E

L

L

T

T

I

C

G

G

L

M

L

I

L

M

S

C

T

L

V

A

R

R

Q

Q

I

I

P

P

G

Q

A

A

E

T

R

A

H

S

L

M

R

K

E

D

G

G

K

K

W

W

P

E

A
x
R

G

K

N

K

Y

F

P

-

L

M

T

G

A

T

S

E

L

L

R

N

G

G

R

K

K

T

V

L

G

G

I

I

L

L

G

G

L

L

G

G

R
|
R

I
|
I

G

G

K

R

A

E

I

V

A

A

K

T

R

R

L

M

Q

Q

A

S

F

F

G

G

L

M

P

K

I

T

S

I

Y

G

Y

Y

G

-

R

-

H

-

K

-

Q

-

D
|
D

G

P

V

I

E

I

F

S

P

P

Y

E

V

V

A

S

D

A

-

S

-

F

-

G

-

V

-

Q

-

L

P

P

V

L

E

E

-

E

-

I

-

W

-

P

L

L

A

C

R

D

Q

F

V

I

D

T

I

V

L

H

I
x
T

S

P

V

L

L

L

P

P

G

-

A

-

A

S

T

T

E

T

K

G

L

L

I

L

G

N

S

D

A

N

V

T

F

F

E

A

A

Q

L

C

G

K

S

K

D

G

G

V

V

R

F

V

V

V

N

N

V
x
C

G
x
A

R
|
R

G

G

S

G

V

I

V

V

D

D

E

E

A

G

A

A

L

L

I

L

E

R

A

A

L

L

R

Q

S

S

K

G

T

Q

I

C

L

A

G

G

A

A

G

A

I

L

D
|
D

V
|
V

F

F

A

T

D

E

E

E

P

P

N

P

V

R

P

D

A

R

E

A

L

L

I

V

A

D

R

H

E

E

N

N

A

V

V

I

L

S

L

C

P

P

H
|
H

V
x
L

A
x
G

S
x
A

A

S

T

T

V

K

H

E

T

A

R

Q

N

S

A

R

M

C

G

G

Q

E

L

E

V

I

V

A

D

V

N

Q

L

F

V

V

S

D

W

M

F

V

D

K

G

G

R

K

G

-

A

S

L

L

T

T

P

G

V

V

P

V

E

N

T

A

K

Q

A

A

T78 (≠ V76) binding NAD(+)
R135 (≠ A133) to W: in PHGDHD; results in a 2-fold decrease in enzyme activity with 3-phosphohydroxypyruvate, but no change in substrate affinity; dbSNP:rs267606949
RI 155:156 (= RI 154:155) binding NAD(+)
D175 (= D179) binding NAD(+)
T207 (≠ I200) binding NAD(+)
CAR 234:236 (≠ VGR 230:232) binding NAD(+)
D260 (= D256) binding NAD(+)
V261 (= V257) to M: in PHGDHD; results in a four-fold decrease in substrate affinity and a slight increase in maximal enzyme activity with 3-phosphohydroxypyruvate; dbSNP:rs267606947
HLGA 283:286 (≠ HVAS 279:282) binding NAD(+)

Sites not aligning to the query:

1 modified: Initiator methionine, Removed
2 modified: N-acetylalanine
373 A → T: in PHGDHD; results in almost undetectable enzyme activity with 3-phosphohydroxypyruvate; dbSNP:rs201553627
377 G → S: in PHGDHD; results in a 2-fold decrease in enzyme activity with 3-phosphohydroxypyruvate, but no change in substrate affinity; dbSNP:rs267606948
425 V → M: in PHGDHD; results in almost undetectable enzyme activity with 3-phosphohydroxypyruvate; dbSNP:rs121907988
490 V → M: in PHGDHD; results in almost undetectable enzyme activity with 3-phosphohydroxypyruvate; dbSNP:rs121907987

6plfA Crystal structure of human phgdh complexed with compound 1 (see paper)
33% identity, 73% coverage: 68:305/325 of query aligns to 66:305/305 of 6plfA

query
sites
6plfA

L

L

E

Q

I

V

G

G

A

R

F

A

G

G

V

T

G

G

Y

V

D

D

Q

N

I

V

D

D

A

L

K

E

W

A

A

A

G

T

E

R

H

K

G

G

I

I

V

L

V

V

T

M

N

N

T

T

P

P

D

N

V

G

L

N

T

S

D

L

E

S

V

A

A

A

D

E

L

L

T

T

I

C

G

G

L

M

L

I

L

M

S

C

T

L

V

A

R

R

Q

Q

I

I

P

P

G

Q

A

A

E

T

R

A

H

S

L

M

R

K

E

D

G

G

K

K

W

W

P

E

A

R

G

K

N

K

Y

F

P

-

L

M

T

G

A

T

S

E

L

L

R

N

G

G

R

K

K

T

V

L

G

G

I

I

L

L

G

G

L

L

G

G

R

R

I

I

G

G

K

R

A

E

I

V

A

A

K

T

R

R

L

M

Q

Q

A

S

F

F

G

G

L

M

P

K

I

T

S

I

Y

G

Y
|
Y

G

-

R

-

H

-

K

-

Q

-

D
|
D

G
x
P

V

I

E

I

F

S

P

P

Y

E

V

V

A

S

D

A

-

S

-

F

-

G

-

V

-

Q

-

L

P

P

V
x
L

E

E

-

E

-

I

-

W

-

P

L

L

A

C

R

D

Q

F

V

I

D

T

I

V

L
x
H

I
x
T

S
x
P

V

L

L

L

P

P

G

-

A

-

A

S

T

T

E

T

K

G

L
|
L

I

L

G

N

S

D

A

N

V

T

F

F

E

A

A

Q

L

C

G

K

S

K

D

G

G

V

V

R

F

V

V

V

N

N

V

C

G

A

R

R

G

G

S

G

V

I

V

V

D

D

E

E

A

G

A

A

L

L

I

L

E

R

A

A

L

L

R

Q

S

S

K

G

T

Q

I

C

L

A

G

G

A

A

G

A

I

L

D

D

V

V

F

F

A

T

D

E

E

E

P

P

N

P

V

R

P

D

A

R

E

A

L

L

I

V

A

D

R

H

E

E

N

N

A

V

V

I

L

S

L

C

P

P

H

H

V

L

A

G

S

A

A

S

T

T

V

K

H

E

T

A

R

Q

N

S

A

R

M

C

G

G

Q

E

L

E

V

I

V

A

D

V

N

Q

L

F

V

V

S

D

W

M

F

V

D

K

G

G

binding 4-{(1S)-1-[(5-chloro-6-{[(5S)-2-oxo-1,3-oxazolidin-5-yl]methoxy}-1H-indole-2-carbonyl)amino]-2-hydroxyethyl}benzoic acid: Y170 (= Y173), D171 (= D179), P172 (≠ G180), L189 (≠ V190), H202 (≠ L199), T203 (≠ I200), P204 (≠ S201), L212 (= L212)

6plgA Crystal structure of human phgdh complexed with compound 15 (see paper)
33% identity, 72% coverage: 68:300/325 of query aligns to 65:299/303 of 6plgA

query
sites
6plgA

L

L

E

Q

I

V

G

G

A

R

F

A

G

G

V

T

G

G

Y

V

D

D

Q

N

I

V

D

D

A

L

K

E

W

A

A

A

G

T

E

R

H

K

G

G

I

I

V

L

V

V

T

M

N

N

T

T

P

P

D

N

V

G

L

N

T

S

D

L

E

S

V

A

A

A

D

E

L

L

T

T

I

C

G

G

L

M

L

I

L

M

S

C

T

L

V

A

R

R

Q

Q

I

I

P

P

G

Q

A

A

E

T

R

A

H

S

L

M

R

K

E

D

G

G

K

K

W

W

P

E

A

R

G

K

N

K

Y

F

P

-

L

M

T

G

A

T

S

E

L

L

R

N

G

G

R

K

K

T

V

L

G

G

I

I

L

L

G

G

L

L

G
|
G

R
|
R

I

I

G

G

K

R

A

E

I

V

A

A

K

T

R

R

L

M

Q

Q

A

S

F

F

G

G

L

M

P

K

I

T

S

I

Y

G

Y

Y

G

-

R

-

H

-

K

-

Q

-

D
|
D

G
x
P

V
x
I

E
x
I

F

S

P

P

Y

E

V

V

A

S

D

A

-

S

-

F

-

G

-

V

-

Q

-

L

P

P

V

L

E

E

-

E

-

I

-

W

-

P

L

L

A

C

R

D

Q

F

V

I

D

T

I

V

L
x
H

I
x
T

S

P

V

L

L
|
L

P

P

G

-

A

-

A

S

T

T

E

T

K

G

L

L

I

L

G

N

S

D

A

N

V

T

F

F

E

A

A

Q

L

C

G

K

S

K

D

G

G

V

V

R

F

V

V

V

N

N

V

C

G

A

R

R

G

G

S

G

V

I

V

V

D

D

E

E

A

G

A

A

L

L

I

L

E

R

A

A

L

L

R

Q

S

S

K

G

T

Q

I

C

L

A

G

G

A

A

G

A

I

L

D

D

V

V

F

F

A

T

D

E

E

E

P

P

N

P

V

R

P

D

A

R

E

A

L

L

I

V

A

D

R

H

E

E

N

N

A

V

V

I

L

S

L

C

P

P

H

H

V

L

A

G

S

A

A

S

T

T

V

K

H

E

T

A

R

Q

N

S

A

R

M

C

G

G

Q

E

L

E

V

I

V

A

D

V

N

Q

L

F

V

V

binding (2S)-(4-{3-[(4,5-dichloro-1-methyl-1H-indole-2-carbonyl)amino]oxetan-3-yl}phenyl)(pyridin-3-yl)acetic acid: G149 (= G153), R150 (= R154), D170 (= D179), P171 (≠ G180), I172 (≠ V181), I173 (≠ E182), H201 (≠ L199), T202 (≠ I200), L205 (= L203)

6rj5A Crystal structure of phgdh in complex with compound 39 (see paper)
33% identity, 72% coverage: 68:300/325 of query aligns to 65:299/301 of 6rj5A

query
sites
6rj5A

L

L

E

Q

I

V

G

G

A

R

F

A

G

G

V

T

G

G

Y

V

D

D

Q

N

I

V

D

D

A

L

K

E

W

A

A

A

G

T

E

R

H

K

G

G

I

I

V

L

V

V

T

M

N

N

T

T

P

P

D

N

V

G

L

N

T

S

D

L

E

S

V

A

A

A

D

E

L

L

T

T

I

C

G

G

L

M

L

I

L

M

S

C

T

L

V

A

R

R

Q

Q

I

I

P

P

G

Q

A

A

E

T

R

A

H

S

L

M

R

K

E

D

G

G

K

K

W

W

P

E

A

R

G

K

N

K

Y

F

P

-

L

M

T

G

A

T

S

E

L

L

R

N

G

G

R

K

K

T

V

L

G

G

I

I

L
|
L

G

G

L

L

G

G

R

R

I

I

G

G

K

R

A

E

I

V

A

A

K

T

R

R

L

M

Q

Q

A

S

F

F

G

G

L

M

P

K

I

T

S

I

Y

G

Y
|
Y

G

-

R

-

H

-

K

-

Q

-

D
|
D

G
x
P

V

I

E
x
I

F

S

P

P

Y

E

V

V

A

S

D

A

-

S

-

F

-

G

-

V

-

Q

-

L

P

P

V

L

E

E

-

E

-

I

-

W

-

P

L

L

A

C

R

D

Q

F

V

I

D

T

I

V

L
x
H

I
x
T

S
x
P

V

L

L

L

P

P

G

-

A

-

A

S

T

T

E

T

K

G

L
|
L

I

L

G

N

S

D

A

N

V

T

F

F

E

A

A

Q

L

C

G

K

S

K

D

G

G

V

V

R

F

V

V

V

N

N

V

C

G

A

R

R

G

G

S

G

V

I

V

V

D

D

E

E

A

G

A

A

L

L

I

L

E

R

A

A

L

L

R

Q

S

S

K

G

T

Q

I

C

L

A

G

G

A

A

G

A

I

L

D

D

V

V

F

F

A

T

D

E

E

E

P

P

N

P

V

R

P

D

A

R

E

A

L

L

I

V

A

D

R

H

E

E

N

N

A

V

V

I

L

S

L

C

P

P

H

H

V

L

A

G

S

A

A

S

T

T

V

K

H

E

T

A

R

Q

N

S

A

R

M

C

G

G

Q

E

L

E

V

I

V

A

D

V

N

Q

L

F

V

V

binding 2-methyl-~{N}-[(1~{R})-1-[4-(methylsulfonylcarbamoyl)phenyl]ethyl]-5-phenyl-pyrazole-3-carboxamide: L146 (= L150), Y169 (= Y173), D170 (= D179), P171 (≠ G180), I173 (≠ E182), H201 (≠ L199), T202 (≠ I200), P203 (≠ S201), L211 (= L212)

6rj3A Crystal structure of phgdh in complex with compound 15 (see paper)
33% identity, 70% coverage: 68:293/325 of query aligns to 64:291/297 of 6rj3A

query
sites
6rj3A

L

L

E

Q

I

V

G

G

A

R

F

A

G

G

V

T

G

G

Y

V

D

D

Q

N

I

V

D

D

A

L

K

E

W

A

A

A

G

T

E

R

H

K

G

G

I

I

V

L

V

V

T

M

N

N

T

T

P

P

D

N

V

G

L

N

T

S

D

L

E

S

V

A

A

A

D

E

L

L

T

T

I

C

G

G

L

M

L

I

L

M

S

C

T

L

V

A

R

R

Q

Q

I

I

P

P

G

Q

A

A

E

T

R

A

H

S

L

M

R

K

E

D

G

G

K

K

W

W

P

E

A

R

G

K

N

K

Y

F

P

-

L

M

T

G

A

T

S

E

L

L

R

N

G

G

R

K

K

T

V

L

G

G

I

I

L
|
L

G

G

L

L

G

G

R

R

I

I

G

G

K

R

A

E

I

V

A

A

K

T

R

R

L

M

Q

Q

A

S

F

F

G

G

L

M

P

K

I

T

S

I

Y

G

Y
|
Y

G

-

R

-

H

-

K

-

Q

-

D
|
D

G
x
P

V
x
I

E
x
I

F

S

P

P

Y

E

V

V

A

S

D

A

-

S

-

F

-

G

-

V

-

Q

-

L

P

P

V

L

E

E

-

E

-

I

-

W

-

P

L

L

A

C

R

D

Q

F

V

I

D

T

I

V

L
x
H

I
x
T

S
x
P

V

L

L

L

P

P

G

-

A

-

A

S

T

T

E

T

K

G

L
|
L

I

L

G

N

S

D

A

N

V

T

F

F

E

A

A

Q

L

C

G

K

S

K

D

G

G

V

V

R

F

V

V

V

N

N

V

C

G

A

R

R

G

G

S

G

V

I

V

V

D

D

E

E

A

G

A

A

L

L

I

L

E

R

A

A

L

L

R

Q

S

S

K

G

T

Q

I

C

L

A

G

G

A

A

G

A

I

L

D

D

V

V

F

F

A

T

D

E

E

E

P

P

N

P

V

R

P

D

A

R

E

A

L

L

I

V

A

D

R

H

E

E

N

N

A

V

V

I

L

S

L

C

P

P

H

H

V

L

A

G

S

A

A

S

T

T

V

K

H

E

T

A

R

Q

N

S

A

R

M

C

G

G

Q

E

binding 4-[(1~{R})-1-[(2-methyl-5-phenyl-pyrazol-3-yl)carbonylamino]ethyl]benzoic acid: L145 (= L150), Y168 (= Y173), D169 (= D179), P170 (≠ G180), I171 (≠ V181), I172 (≠ E182), H200 (≠ L199), T201 (≠ I200), P202 (≠ S201), L210 (= L212)

6cwaA Crystal structure phgdh in complex with nadh and 3-phosphoglycerate at 1.77 a resolution (see paper)
33% identity, 72% coverage: 68:300/325 of query aligns to 64:298/299 of 6cwaA

query
sites
6cwaA

L

L

E

Q

I

V

G

G

A

R

F

A

G

G

V

T

G

G

Y

V

D

D

Q

N

I

V

D

D

A

L

K

E

W

A

A

A

G

T

E

R

H

K

G

G

I

I

V

L

V

V

T

M

N

N

T

T

P

P

D

N

V

G

L
x
N

T

S

D

L

E

S

V
x
A

A

A

D

E

L

L

T

T

I

C

G

G

L

M

L

I

L

M

S

C

T

L

V

A

R

R

Q

Q

I

I

P

P

G

Q

A

A

E

T

R

A

H

S

L

M

R

K

E

D

G

G

K

K

W

W

P

E

A

R

G

K

N

K

Y

F

P

-

L

M

T

G

A

T

S

E

L

L

R

N

G

G

R

K

K

T

V

L

G

G

I

I

L

L

G

G

L

L

G

G

R
|
R

I
|
I

G

G

K

R

A

E

I

V

A

A

K

T

R

R

L

M

Q

Q

A

S

F

F

G

G

L

M

P

K

I

T

S

I

Y

G

Y
|
Y

G

-

R

-

H

-

K

-

Q

-

D
|
D

G
x
P

V
x
I

E

I

F

S

P

P

Y

E

V

V

A

S

D

A

-

S

-

F

-

G

-

V

-

Q

-

L

P

P

V

L

E

E

-

E

-

I

-

W

-

P

L

L

A

C

R

D

Q

F

V

I

D

T

I

V

L
x
H

I
x
T

S
x
P

V

L

L

L

P

P

G

-

A

-

A

S

T
|
T

E

T

K

G

L

L

I

L

G

N

S

D

A

N

V

T

F

F

E

A

A

Q

L

C

G

K

S

K

D

G

G

V

V

R

F

V

V

V

N

N

V
x
C

G
x
A

R
|
R

G

G

S

G

V

I

V

V

D

D

E

E

A

G

A

A

L

L

I

L

E

R

A

A

L

L

R

Q

S

S

K

G

T

Q

I

C

L

A

G

G

A

A

G

A

I

L

D

D

V

V

F

F

A

T

D

E

E

E

P

P

N

P

V

R

P

D

A

R

E

A

L

L

I

V

A

D

R

H

E

E

N

N

A

V

V

I

L

S

L

C

P

P

H
|
H

V

L

A
x
G

S

A

A

S

T

T

V

K

H

E

T

A

R

Q

N

S

A

R

M

C

G

G

Q

E

L

E

V

I

V

A

D

V

N

Q

L

F

V

V

binding 1,4-dihydronicotinamide adenine dinucleotide: N96 (≠ L100), A100 (≠ V104), R149 (= R154), I150 (= I155), Y168 (= Y173), D169 (= D179), P170 (≠ G180), I171 (≠ V181), H200 (≠ L199), T201 (≠ I200), P202 (≠ S201), T207 (= T209), C228 (≠ V230), A229 (≠ G231), R230 (= R232), H277 (= H279), G279 (≠ A281)

7dkmA Phgdh covalently linked to oridonin (see paper)
33% identity, 72% coverage: 68:300/325 of query aligns to 66:300/306 of 7dkmA

query
sites
7dkmA

L

L

E

Q

I

V

G

G

A

R

F

A

G

G

V
x
T

G

G

Y

V

D

D

Q

N

I

V

D

D

A

L

K

E

W

A

A

A

G

T

E

R

H

K

G

G

I

I

V

L

V

V

T

M

N

N

T

T

P

P

D

N

V

G

L

N

T

S

D

L

E

S

V
x
A

A

A

D

E

L

L

T

T

I

C

G

G

L

M

L

I

L

M

S

C

T

L

V

A

R

R

Q

Q

I

I

P

P

G

Q

A

A

E

T

R

A

H

S

L

M

R

K

E

D

G

G

K

K

W

W

P

E

A

R

G

K

N

K

Y

F

P

-

L

M

T

G

A

T

S

E

L

L

R

N

G

G

R

K

K

T

V

L

G

G

I

I

L

L

G
|
G

L

L

G

G

R
|
R

I
|
I

G

G

K

R

A

E

I

V

A

A

K

T

R

R

L

M

Q

Q

A

S

F

F

G

G

L

M

P

K

I

T

S

I

Y

G

Y
|
Y

G

-

R

-

H

-

K

-

Q

-

D
|
D

G
x
P

V
x
I

E

I

F

S

P

P

Y

E

V

V

A

S

D

A

-

S

-

F

-

G

-

V

-

Q

-

L

P

P

V

L

E

E

-

E

-

I

-

W

-

P

L

L

A

C

R

D

Q

F

V

I

D

T

I

V

L
x
H

I
x
T

S
x
P

V

L

L

L

P

P

G

-

A

-

A

S

T
|
T

E

T

K

G

L

L

I

L

G

N

S

D

A

N

V

T

F

F

E

A

A

Q

L

C

G

K

S

K

D

G

G

V

V

R

F

V

V

V

N

N

V
x
C

G
x
A

R
|
R

G

G

S

G

V

I

V

V

D

D

E

E

A

G

A

A

L

L

I

L

E

R

A

A

L

L

R

Q

S

S

K

G

T

Q

I

C

L

A

G

G

A

A

G

A

I

L

D

D

V

V

F

F

A

T

D

E

E

E

P

P

N

P

V

R

P

D

A

R

E

A

L

L

I

V

A

D

R

H

E

E

N

N

A

V

V

I

L

S

L

C

P

P

H
|
H

V

L

A
x
G

S

A

A

S

T

T

V

K

H

E

T

A

R

Q

N

S

A

R

M

C

G

G

Q
x
E

L

E

V

I

V

A

D

V

N

Q

L

F

V

V

binding nicotinamide-adenine-dinucleotide: T74 (≠ V76), A102 (≠ V104), G148 (= G151), R151 (= R154), I152 (= I155), Y170 (= Y173), D171 (= D179), P172 (≠ G180), I173 (≠ V181), H202 (≠ L199), T203 (≠ I200), P204 (≠ S201), T209 (= T209), C230 (≠ V230), A231 (≠ G231), R232 (= R232), H279 (= H279), G281 (≠ A281)
binding (1beta,6beta,7beta,8alpha,9beta,10alpha,13alpha,14R,16beta)-1,6,7,14-tetrahydroxy-7,20-epoxykauran-15-one: E293 (≠ Q293)

Sites not aligning to the query:

binding (1beta,6beta,7beta,8alpha,9beta,10alpha,13alpha,14R,16beta)-1,6,7,14-tetrahydroxy-7,20-epoxykauran-15-one: 14, 17, 18

7ewhA Crystal structure of human phgdh in complex with homoharringtonine (see paper)
33% identity, 72% coverage: 68:300/325 of query aligns to 65:299/302 of 7ewhA

query
sites
7ewhA

L

L

E

Q

I

V

G

G

A

R

F

A

G

G

V

T

G

G

Y

V

D

D

Q

N

I

V

D

D

A

L

K

E

W

A

A

A

G

T

E

R

H

K

G

G

I

I

V

L

V

V

T

M

N

N

T

T

P

P

D

N

V

G

L

N

T

S

D

L

E

S

V

A

A

A

D

E

L

L

T

T

I

C

G

G

L

M

L

I

L

M

S

C

T

L

V

A

R

R

Q

Q

I

I

P

P

G

Q

A

A

E

T

R

A

H

S

L

M

R

K

E

D

G

G

K

K

W

W

P

E

A

R

G

K

N

K

Y

F

P

-

L

M

T

G

A

T

S

E

L

L

R

N

G

G

R

K

K

T

V

L

G

G

I

I

L
|
L

G
|
G

L
|
L

G
|
G

R
|
R

I
|
I

G
|
G

K

R

A

E

I

V

A

A

K

T

R

R

L

M

Q

Q

A

S

F

F

G

G

L

M

P

K

I

T

S

I

Y

G

Y

Y

G

-

R

-

H

-

K

-

Q

-

D
|
D

G

P

V

I

E

I

F

S

P

P

Y

E

V

V

A

S

D

A

-

S

-

F

-

G

-

V

-

Q

-

L

P

P

V

L

E

E

-

E

-

I

-

W

-

P

L

L

A

C

R

D

Q

F

V

I

D

T

I

V

L
x
H

I
x
T

S
x
P

V

L

L

L

P

P

G

-

A

-

A

S

T

T

E

T

K

G

L

L

I

L

G

N

S

D

A

N

V

T

F

F

E

A

A

Q

L

C

G

K

S

K

D

G

G

V

V

R

F

V

V

V

N

N

V

C

G

A

R

R

G

G

S

G

V

I

V

V

D

D

E

E

A

G

A

A

L

L

I

L

E

R

A

A

L

L

R

Q

S

S

K

G

T

Q

I

C

L

A

G

G

A

A

G

A

I

L

D

D

V

V

F

F

A

T

D

E

E

E

P

P

N

P

V

R

P

D

A

R

E

A

L

L

I

V

A

D

R

H

E

E

N

N

A

V

V

I

L

S

L

C

P

P

H

H

V

L

A

G

S

A

A

S

T

T

V

K

H

E

T

A

R

Q

N

S

A

R

M

C

G

G

Q

E

L

E

V

I

V

A

D

V

N

Q

L

F

V

V

binding (3beta)-O~3~-[(2R)-2,6-dihydroxy-2-(2-methoxy-2-oxoethyl)-6-methylheptanoyl]cephalotaxine: L146 (= L150), G147 (= G151), L148 (= L152), G149 (= G153), R150 (= R154), I151 (= I155), G152 (= G156), D170 (= D179), H201 (≠ L199), T202 (≠ I200), P203 (≠ S201)

Query Sequence

>WP_037454055.1 NCBI__GCF_000576635.1:WP_037454055.1
MSKPEILQIAPMLPIVTDQLDKMFTLHRLWEASDKDAWLTEHGARIRGVAAGGHAGVDES
LMARLPTLEIIGAFGVGYDQIDAKWAGEHGIVVTNTPDVLTDEVADLTIGLLLSTVRQIP
GAERHLREGKWPAGNYPLTASLRGRKVGILGLGRIGKAIAKRLQAFGLPISYYGRHKQDG
VEFPYVADPVELARQVDILISVLPGGAATEKLIGSAVFEALGSDGVFVNVGRGSVVDEAA
LIEALRSKTILGAGIDVFADEPNVPAELIARENAVLLPHVASATVHTRNAMGQLVVDNLV
SWFDGRGALTPVPETKAAAEKAGKK

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory