SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_037457428.1 NCBI__GCF_000576635.1:WP_037457428.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

P68183 Maltose/maltodextrin transport system permease protein MalG from Escherichia coli (strain K12) (see 2 papers)
30% identity, 72% coverage: 66:255/263 of query aligns to 88:285/296 of P68183

query
sites
P68183
S
 
S
L
 
V
S
 
K
L
 
V
A
 
A
A
 
G
I
 
I
V
 
S
T
 
A
V
 
I
L
 
G
S
 
I
L
 
V
A
 
A
A
 
L
G
 
S
I
 
T
P
 
T
A
 
C
A
 
A
Y
 
Y
A
 
A
L
 
F
H
 
A
R
 
R
F
 
M
R
 
R
F
 
F
R
 
P
G
 
G
R
 
K
D
 
A
A
 
T
L
 
L
M
 
L
N
 
K
L
 
G
F
 
M
T
 
L
A
 
I
P
 
F
L
 
Q
L
 
M
L
 
F
P
 
P
S
 
A
I
 
V
V
 
L
L
 
S
G
 
L
L
 
V
S
 
A
I
 
L
L
 
Y
L
 
A
V
 
L
F
 
F
V
 
D
K
 
R
L
 
L
Q
 
G
L
 
E
L
 
Y
A
 
I
T
 
P
F
 
F
V
 
I
G
 
G
L
 
L
V
 
N
V
 
T
A
 
-
H
 
H
L
 
G
I
 
G
V
 
V
T
 
I
T
 
F
P
 
A
Y
 
Y
V
 
L
-
 
G
-
 
G
-
 
I
-
 
A
-
 
L
-
 
H
V
 
V
R
 
W
I
 
T
M
 
I
S
 
K
T
 
G
A
 
Y
L
 
F
T
 
E
T
 
T
L
 
I
P
 
D
P
 
S
S
 
S
V
 
L
E
 
E
E
|
E
A
 
A
A
|
A
T
 
A
M
 
L
L
 
D
G
|
G
A
 
A
S
 
T
P
 
P
L
 
W
V
 
Q
V
 
A
F
 
F
R
 
R
R
 
L
V
 
V
T
 
L
L
 
L
P
|
P
L
 
L
M
 
S
M
 
V
P
 
P
G
 
I
L
 
L
V
 
A
A
 
V
S
 
V
A
 
F
A
 
I
L
 
L
S
 
S
F
 
F
L
 
I
L
 
A
S
 
A
F
 
I
D
 
T
E
 
E
V
 
V
-
 
P
V
 
V
I
 
A
S
 
S
L
 
L
F
 
L
I
 
L
T
 
R
G
 
D
P
 
V
H
 
N
I
 
S
T
 
Y
T
 
T
L
 
L
P
 
A
V
 
V
E
 
G
I
 
M
F
 
Q
N
 
Q
Y
 
Y
V
 
L
E
 
N
S
 
P
R
 
Q
T
 
N
-
 
Y
-
 
L
-
 
W
-
 
G
D
 
D
P
 
-
L
 
-
I
 
F
A
 
A
A
 
A
V
 
A
S
 
A
V
 
V
V
 
M
L
 
S
V
 
A
A
 
L
A
 
P
T
 
I
L
 
T
L
 
I
V
 
V
V
 
F
L
 
L
L
 
L
V
 
A
E
 
Q
R
 
R
S
 
W
L
 
L

P94530 Arabinooligosaccharides transport system permease protein AraQ from Bacillus subtilis (strain 168) (see paper)
25% identity, 73% coverage: 63:253/263 of query aligns to 77:268/281 of P94530

query
sites
P94530
F
 
F
Q
 
F
V
 
N
S
 
S
L
 
L
S
 
V
L
 
L
A
 
G
A
 
L
I
 
F
V
 
T
T
 
T
V
 
V
L
 
L
S
 
T
L
 
L
A
 
F
A
 
F
G
 
S
I
 
S
P
 
M
A
 
I
A
 
G
Y
 
Y
A
 
G
L
 
L
H
 
A
R
 
V
F
 
Y
R
 
D
F
 
F
R
 
K
G
 
G
R
 
R
D
 
N
A
 
I
L
 
I
M
 
F
N
 
V
L
 
L
F
 
V
T
 
L
A
 
I
P
 
I
L
 
M
L
 
M
L
 
V
P
 
P
S
 
L
I
 
E
V
 
V
L
 
M
G
 
M
L
 
L
S
 
P
I
 
L
L
 
F
L
 
K
V
 
L
F
 
T
V
 
V
K
 
G
L
 
L
Q
 
H
L
 
L
L
 
I
A
 
D
T
 
S
F
 
Y
V
 
T
G
 
G
L
 
V
V
 
I
V
 
L
A
 
P
H
 
F
L
 
I
I
 
V
V
 
-
T
 
-
T
 
S
P
 
P
Y
 
V
V
 
A
V
 
V
R
 
F
I
 
F
M
 
F
S
 
R
T
 
Q
A
 
Y
L
 
A
T
 
L
T
 
G
L
 
L
P
 
P
P
 
R
S
 
D
V
 
L
E
 
L
E
 
D
A
 
S
A
 
A
T
 
R
M
 
M
L
x
D
G
 
G
A
 
C
S
 
T
P
 
E
L
 
F
V
 
G
V
 
I
F
 
F
R
 
F
R
 
R
V
 
I
T
 
M
L
 
A
P
 
P
L
 
L
M
 
M
M
 
K
P
 
P
G
 
A
L
 
F
V
 
G
A
 
A
S
 
M
A
 
I
A
 
I
L
 
L
S
 
Q
F
 
S
L
 
L
L
 
N
S
 
S
F
 
W
D
 
N
E
 
N
V
 
F
V
 
L
I
 
W
S
 
P
L
 
L
F
 
I
I
 
V
-
 
L
T
 
R
G
 
S
P
 
K
H
 
E
I
 
M
T
 
F
T
 
T
L
 
L
P
 
P
V
 
I
E
 
G
I
 
L
F
 
S
N
 
S
Y
 
L
V
 
L
E
 
S
-
 
P
-
 
Y
-
 
G
S
 
N
R
 
N
T
 
Y
D
 
D
P
 
M
L
 
L
I
 
I
A
 
S
A
 
G
V
 
-
S
 
S
V
 
V
V
 
F
L
 
A
V
 
I
A
 
L
A
 
P
T
 
V
L
 
I
L
 
I
V
 
I
V
 
F
L
 
L
L
 
F
V
 
F
E
 
Q
R
 
K

Query Sequence

>WP_037457428.1 NCBI__GCF_000576635.1:WP_037457428.1
MVGSTTVGFRVLVTGLYLFLLAPILIVVPLSFSDDNILTFPPTSWGVRWYAQMFEHQALV
NAFQVSLSLAAIVTVLSLAAGIPAAYALHRFRFRGRDALMNLFTAPLLLPSIVLGLSILL
VFVKLQLLATFVGLVVAHLIVTTPYVVRIMSTALTTLPPSVEEAATMLGASPLVVFRRVT
LPLMMPGLVASAALSFLLSFDEVVISLFITGPHITTLPVEIFNYVESRTDPLIAAVSVVL
VAATLLVVLLVERSLGLSKAMGK

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory