SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_038017558.1 NCBI__GCF_000757425.2:WP_038017558.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

P52697 6-phosphogluconolactonase; 6-P-gluconolactonase; Pgl; EC 3.1.1.31 from Escherichia coli (strain K12) (see paper)
28% identity, 85% coverage: 27:335/364 of query aligns to 12:301/331 of P52697

query
sites
P52697
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L
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L
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D
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V
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D
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K
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R
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Y
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L
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Y
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P
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E
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F
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-
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R
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V
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L
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A
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I
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A
P
 
P
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D
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D
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G
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A
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L
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A
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A
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E
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A
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L
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P
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G
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S
P
 
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T
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H
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I
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T
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D
P
 
H
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V
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G
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S
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N
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A
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A
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S
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K
E
 
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P
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G
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N
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Q
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T
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L
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D
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N
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D
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V

Query Sequence

>WP_038017558.1 NCBI__GCF_000757425.2:WP_038017558.1
MQPQTLLLGSWTGMSGHPRAEKTAHPSEGIYRLQLLADGSLQVVDRLKTDNPSWIVLSQD
QRFLYTTNESETGRVSAIEITPQGPLRLLNSQQTRGAHPTHACLTPDGRYLLAANYSDGM
NNAGFIVFPLVDSGEIGEAVQHVRFAEGSAVVAERQQSGHAHSVNISPDGKILYVADLGA
DIVRIYHYQPQNDTPFLHQPQDDIRLPGGAGPRHIAFSDDGRFVCVVSEMSAQVHLFQMN
EGQLNAIQTLELADSDSAEDKAGAGVLYSPDGRFLYVGNRQQRNEIVVFSVDPHSGRLSD
RQQFSSGGIEPRAFAFDNTGHFLLVANVWSNRVTVLARDPHNGGLRPTGNSLDIGTPTDI
KFLR

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory