SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_038022371.1 NCBI__GCF_000757425.2:WP_038022371.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

H1ZZB0 Aurachin B dehydrogenase; EC 1.1.1.394 from Stigmatella aurantiaca (see paper)
40% identity, 24% coverage: 1:72/303 of query aligns to 1:72/334 of H1ZZB0

query
sites
H1ZZB0
M
 
M
R
 
R
V
 
T
F
 
F
L
 
V
T
 
T
G
 
G
A
 
G
T
 
S
G
 
G
F
 
Y
I
 
L
G
 
G
S
 
R
R
 
N
I
 
L
I
 
L
G
 
S
E
 
A
L
 
L
T
 
V
E
 
A
A
 
R
G
 
G
H
 
I
Q
 
S
V
 
V
I
 
R
G
 
A
L
 
L
A
 
V
R
 
R
T
 
S
A
 
E
E
 
E
A
 
A
E
 
A
Q
 
Q
Y
 
K
L
 
V
Q
 
Q
Q
 
A
K
 
L
G
 
G
V
 
A
Q
 
Q
A
 
P
H
 
I
K
 
L
G
 
G
S
 
T
L
 
L
E
 
E
H
 
H
P
 
R
E
 
E
T
 
T
L
 
L
T
 
K
A
 
E
G
 
G
A
 
M
S
 
A
L
 
G
A
 
C
D
 
D
A
 
V
V
 
L
I
 
F
H
 
H
C
 
A
A
 
A

Sites not aligning to the query:

Query Sequence

>WP_038022371.1 NCBI__GCF_000757425.2:WP_038022371.1
MRVFLTGATGFIGSRIIGELTEAGHQVIGLARTAEAEQYLQQKGVQAHKGSLEHPETLTA
GASLADAVIHCAFDHNFEKFAENCQKEREAIKALGAGLQGSDRPLIITSGIGTGDAGDGL
PARESVFNSDHPNPRIVSELEGQKLLSQGVDVRIVRLPQVHDTTRQGLLSPYAACCIRQG
KVACANDGSNRWPAVHVSDAARLYALVLDHGQKGQRYNAVAEEGVTSDLITQALSKGLNL
PRVFISGDELQAFFGWMSMFADKDMPASGAWTQQQLGWHPRGPVLIEDLSSMDYRLLTGE
AVS

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory