SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_038209771.1 NCBI__GCF_000745855.1:WP_038209771.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

6j2lA Crystal structure of bi-functional enzyme (see paper)
38% identity, 46% coverage: 25:82/126 of query aligns to 125:178/200 of 6j2lA

query
sites
6j2lA
R
 
K
G
 
Y
G
 
A
D
 
D
P
 
P
E
 
E
A
 
T
S
 
S
Y
 
Y
V
 
T
A
 
A
R
 
K
L
 
L
L
 
Y
H
 
A
R
 
S
G
 
G
P
 
T
D
 
K
A
 
R
F
 
I
L
 
A
K
 
Q
K
 
K
I
 
V
G
 
G
E
 
E
E
|
E
A
 
G
T
 
V
E
 
E
V
 
T
V
 
A
M
 
L
A
 
A
A
 
A
K
 
T
D
 
V
A
 
H
D
 
D
H
 
-
G
 
-
G
 
-
E
 
-
R
 
R
Q
 
F
K
 
E
I
 
L
V
 
T
N
 
N
E
|
E
V
 
A
A
 
S
D
|
D
L
 
L
W
 
M
F
 
Y
H
 
H

Sites not aligning to the query:

Query Sequence

>WP_038209771.1 NCBI__GCF_000745855.1:WP_038209771.1
MGEPASTTDVLDRLAAVIDSRLPGRGGDPEASYVARLLHRGPDAFLKKIGEEATEVVMAA
KDADHGGERQKIVNEVADLWFHSMIALAHYGLAPRDVAAELARREGTSGIEEKALRKAQG
REAAGD

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory