Comparing WP_038211563.1 NCBI__GCF_000745855.1:WP_038211563.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
1zuiA Structural basis for shikimate-binding specificity of helicobacter pylori shikimate kinase (see paper)
28% identity, 52% coverage: 138:299/311 of query aligns to 1:158/158 of 1zuiA
3mufA Shikimate kinase from helicobacter pylori in complex with shikimate-3- phosphate and adp (see paper)
28% identity, 52% coverage: 138:299/311 of query aligns to 1:160/160 of 3mufA
3n2eA Crystal structure of helicobactor pylori shikimate kinase in complex with nsc162535 (see paper)
28% identity, 52% coverage: 138:299/311 of query aligns to 2:161/168 of 3n2eA
1u8aA Crystal structure of mycobacterium tuberculosis shikimate kinase in complex with shikimate and adp at 2.15 angstrom resolution (see paper)
30% identity, 48% coverage: 142:291/311 of query aligns to 6:151/163 of 1u8aA
Sites not aligning to the query:
2iywA Shikimate kinase from mycobacterium tuberculosis in complex with mgatp, open lid (conf. B) (see paper)
30% identity, 48% coverage: 142:291/311 of query aligns to 6:153/178 of 2iywA
Sites not aligning to the query:
4bqsA Crystal structure of mycobacterium tuberculosis shikimate kinase in complex with adp and a shikimic acid derivative. (see paper)
30% identity, 48% coverage: 142:291/311 of query aligns to 6:153/169 of 4bqsA
Sites not aligning to the query:
2iyyA Shikimate kinase from mycobacterium tuberculosis in complex with shikimate-3-phosphate and so4 (see paper)
30% identity, 48% coverage: 142:291/311 of query aligns to 6:153/169 of 2iyyA
3bafA Crystal structure of shikimate kinase from mycobacterium tuberculosis in complex with amp-pnp
30% identity, 48% coverage: 142:291/311 of query aligns to 6:153/165 of 3bafA
2dfnA Structure of shikimate kinase from mycobacterium tuberculosis complexed with adp and shikimate at 1.9 angstrons of resolution (see paper)
30% identity, 48% coverage: 142:291/311 of query aligns to 6:153/165 of 2dfnA
Sites not aligning to the query:
1we2A Crystal structure of shikimate kinase from mycobacterium tuberculosis in complex with mgadp and shikimic acid (see paper)
30% identity, 48% coverage: 142:291/311 of query aligns to 6:153/165 of 1we2A
1zyuA Crystal structure of mycobacterium tuberculosis shikimate kinase in complex with shikimate and amppcp at 2.85 angstrom resolution (see paper)
30% identity, 48% coverage: 142:291/311 of query aligns to 6:153/168 of 1zyuA
Sites not aligning to the query:
P10880 Shikimate kinase 2; SK 2; Shikimate kinase II; SKII; EC 2.7.1.71 from Dickeya chrysanthemi (Pectobacterium chrysanthemi) (Erwinia chrysanthemi) (see paper)
32% identity, 45% coverage: 140:278/311 of query aligns to 5:143/173 of P10880
Sites not aligning to the query:
2iyvA Shikimate kinase from mycobacterium tuberculosis in complex with adp, open lid (conf. B) (see paper)
30% identity, 48% coverage: 142:291/311 of query aligns to 6:153/179 of 2iyvA
Sites not aligning to the query:
P07547 Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (Aspergillus nidulans) (see 2 papers)
36% identity, 30% coverage: 130:222/311 of query aligns to 855:949/1583 of P07547
Sites not aligning to the query:
1e6cA K15m mutant of shikimate kinase from erwinia chrysanthemi (see paper)
31% identity, 45% coverage: 140:278/311 of query aligns to 5:143/170 of 1e6cA
2shkB The three-dimensional structure of shikimate kinase from erwinia chrysanthemi complexed with adp (see paper)
32% identity, 45% coverage: 140:278/311 of query aligns to 5:133/162 of 2shkB
Sites not aligning to the query:
6hqvA Pentafunctional arom complex from chaetomium thermophilum (see paper)
34% identity, 28% coverage: 133:219/311 of query aligns to 837:926/1555 of 6hqvA
Sites not aligning to the query:
1shkA The three-dimensional structure of shikimate kinase from erwinia chrysanthemi (see paper)
31% identity, 40% coverage: 140:264/311 of query aligns to 5:127/158 of 1shkA
Sites not aligning to the query:
C1CYP4 HTH-type transcriptional regulator DdrOC from Deinococcus deserti (strain DSM 17065 / CIP 109153 / LMG 22923 / VCD115) (see paper)
44% identity, 20% coverage: 34:94/311 of query aligns to 5:65/129 of C1CYP4
Sites not aligning to the query:
7tbvA Crystal structure of the shikimate kinase + 3-dehydroquinate dehydratase + 3-dehydroshikimate dehydrogenase domains of aro1 from candida albicans (see paper)
29% identity, 27% coverage: 135:219/311 of query aligns to 1:86/682 of 7tbvA
Sites not aligning to the query:
>WP_038211563.1 NCBI__GCF_000745855.1:WP_038211563.1
MTDQESALAVRPAQEHAAAEPAESRDPLLTAVGERVRSLRARRGLTRKAVALAADVSERH
LANLEYGTGNVSILVLQQVAGALQCSMAELLGDVTTSSPEWLLIRELLENRSEPDLRRVR
MAIGELLGTAAVDPARSRRIALVGLRGAGKSTLGQMLADDLELPFIELGREVEKLAGCSV
REIHDLYGTNAYRRYERRALEETVQIYSEVVIATPGGIVSDPATFNELLAHCTTVWLRAR
PEEHMGRVAAQGDVRPMAASREAMDDLKRILDGRAAFYSKADLQVDTSGRTLQQAFEALR
TAVRQAMAEAG
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory