Comparing WP_040828345.1 NCBI__GCF_000310185.1:WP_040828345.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 15 hits to proteins with known functional sites (download)
3uf6A The crystal structure of a possible phosphate acetyl/butaryl transferase (from listeria monocytogenes egd-e) in complex with cod (3'-dephosphocoenzyme a)
41% identity, 46% coverage: 235:451/468 of query aligns to 61:276/285 of 3uf6A
3u9eB The crystal structure of a possible phosphate acetyl/butaryl transferase (from listeria monocytogenes egd-e) in complex with coa.
41% identity, 46% coverage: 235:451/468 of query aligns to 63:278/288 of 3u9eB
P86397 Hydroxyacyl-thioester dehydratase type 2, mitochondrial; HsHTD2; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase; EC 4.2.1.59 from Homo sapiens (Human) (see paper)
34% identity, 29% coverage: 10:146/468 of query aligns to 28:163/168 of P86397
Sites not aligning to the query:
1xcoD Crystal structure of a phosphotransacetylase from bacillus subtilis in complex with acetylphosphate (see paper)
27% identity, 51% coverage: 206:446/468 of query aligns to 43:311/325 of 1xcoD
Q8ZND6 Phosphate acetyltransferase; Phosphotransacetylase; EC 2.3.1.222; EC 2.3.1.8 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see paper)
29% identity, 44% coverage: 257:464/468 of query aligns to 506:714/714 of Q8ZND6
Sites not aligning to the query:
A0A3Q7HWE4 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FERN, mitochondrial; 3-hydroxyl-ACP dehydratase FERN; Protein FERN-LIKE; SlFERN; EC 4.2.1.59 from Solanum lycopersicum (Tomato) (Lycopersicon esculentum) (see paper)
27% identity, 28% coverage: 18:147/468 of query aligns to 23:152/165 of A0A3Q7HWE4
O32472 (R)-specific enoyl-CoA hydratase; EC 4.2.1.119 from Aeromonas caviae (Aeromonas punctata) (see 2 papers)
31% identity, 28% coverage: 18:146/468 of query aligns to 6:134/134 of O32472
Sites not aligning to the query:
P38503 Phosphate acetyltransferase; Phosphotransacetylase; EC 2.3.1.8 from Methanosarcina thermophila (see 2 papers)
25% identity, 60% coverage: 184:462/468 of query aligns to 19:333/333 of P38503
Sites not aligning to the query:
2af3C Phosphotransacetylase from methanosarcina thermophila soaked with coenzyme a (see paper)
25% identity, 60% coverage: 184:462/468 of query aligns to 18:332/332 of 2af3C
6ioxA Crystal structure of porphyromonas gingivalis phosphotransacetylase in complex with acetyl-coa (see paper)
29% identity, 42% coverage: 250:446/468 of query aligns to 117:321/339 of 6ioxA
P77455 Bifunctional protein PaaZ; EC 3.3.2.12; EC 1.2.1.91 from Escherichia coli (strain K12) (see paper)
36% identity, 22% coverage: 13:115/468 of query aligns to 529:633/681 of P77455
Sites not aligning to the query:
6jqoA Structure of paaz, a bifunctional enzyme in complex with NADP+ and ccoa (see paper)
36% identity, 22% coverage: 13:115/468 of query aligns to 528:632/678 of 6jqoA
Sites not aligning to the query:
6jqnA Structure of paaz, a bifunctional enzyme in complex with NADP+ and ocoa (see paper)
36% identity, 22% coverage: 13:115/468 of query aligns to 528:632/678 of 6jqnA
Sites not aligning to the query:
6jqmA Structure of paaz with NADPH (see paper)
36% identity, 22% coverage: 13:115/468 of query aligns to 528:632/678 of 6jqmA
Sites not aligning to the query:
6zngF Maeb full-length acetyl-coa bound state (see paper)
26% identity, 37% coverage: 298:468/468 of query aligns to 584:752/753 of 6zngF
Sites not aligning to the query:
>WP_040828345.1 NCBI__GCF_000310185.1:WP_040828345.1
MKAPAAQQMIQNRTFDEIQVGDFAQLVRTLRPEDIHLFAAMSGDVNPTHVDLEYARSSQF
REVVGHSMWGSTLISTVLGTEFPGPGTVYVSQGLNFWRPITIGDTLTITVTCKEKFEHNH
HIIFDCLAVNQDGLKVIDGIAEVMAPTEKISRARVVLPEVTVSDRELRYRHLLSVSAGLS
PIPIAVAHPCDRESLLGPVQAARAGLVEPILVGPESRIRAVAEEHEIDIKGLRIVDTEHS
HASAEVAVALCRDGGAEALMKGSLHTDEMMSQVIKHLRTGRRISHVFLADVPTYPHPLMI
TDAAIMIEPTLEDKVDIIQNAIELAHILGLPEPKVAILSAVETVTSKIRSTIDAAALCKM
ADRGQIKGGLLDGPLAFDNAVSLVAAKTKGIKSVVAGNADILVVPDLESGNMVAKQLEYL
ANALMAGVVLGARVPIVLTSRADTAETRTASCAVVQLMAHKKREALKA
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory