SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_041368447.1 NCBI__GCF_000021745.1:WP_041368447.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

8wm8B Cryo-em structure of cyanobacterial nitrate/nitrite transporter nrtbcd in complex with nitrate (see paper)
32% identity, 66% coverage: 74:255/277 of query aligns to 70:254/265 of 8wm8B

query
sites
8wm8B
H
 
Q
I
 
I
R
 
L
A
 
S
T
 
S
L
 
L
L
 
G
R
 
R
V
 
V
G
 
G
A
 
L
G
 
G
F
 
F
A
 
S
L
 
L
G
 
A
V
 
A
F
 
I
A
 
A
G
 
G
T
 
I
T
 
I
L
 
L
G
 
G
V
 
I
L
 
L
A
 
I
G
 
G
A
 
V
S
 
N
S
 
P
L
 
L
G
 
V
R
 
Y
A
 
N
L
 
A
I
 
V
D
 
D
P
 
P
T
 
I
L
 
F
Q
 
Q
G
 
V
L
 
L
R
 
R
A
 
T
I
 
V
P
 
P
S
 
P
I
 
L
A
 
A
W
 
W
V
 
L
P
 
P
L
 
I
F
 
S
I
 
L
L
 
A
W
 
A
F
 
F
G
 
Q
I
 
Q
F
 
A
E
 
N
A
 
P
S
 
S
K
 
A
I
 
I
A
 
F
L
 
V
I
 
I
A
 
F
V
 
I
G
 
T
V
 
S
A
 
I
F
 
W
P
 
P
I
 
I
Y
 
L
L
 
L
G
 
N
I
 
T
F
 
T
G
 
V
A
 
G
I
 
V
L
 
Q
A
 
Q
V
 
I
D
 
P
R
 
Q
K
 
D
I
 
Y
I
 
I
E
 
N
A
 
V
G
 
A
R
 
K
S
 
V
F
 
L
R
 
R
L
 
L
E
 
K
G
 
G
V
 
V
A
 
K
L
 
Y
A
 
F
R
 
F
R
 
K
I
 
I
L
 
V
F
 
F
P
 
P
A
 
A
V
 
T
L
 
V
P
 
P
H
 
Y
Y
 
I
V
 
F
V
 
T
A
 
G
L
 
L
R
 
R
S
 
I
G
 
G
L
 
I
G
 
G
L
 
L
G
 
S
W
 
W
M
x
L
F
 
A
V
 
I
V
 
V
A
|
A
A
 
A
E
 
E
F
 
M
M
 
L
G
 
V
A
 
G
S
 
G
E
 
V
G
 
G
L
 
I
G
 
G
Y
 
S
L
 
F
L
 
I
V
 
W
D
 
D
G
 
A
Q
 
Y
Q
 
N
L
 
T
G
 
T
K
 
T
P
 
E
-
 
T
-
 
N
-
 
L
A
 
S
Q
 
E
I
 
I
I
 
I
A
 
L
A
 
A
I
 
L
F
 
I
T
 
Y
F
 
V
A
 
G
V
 
L
L
 
V
G
 
G
K
 
L
A
 
L
T
 
L
D
 
D
A
 
R
L
 
L
L
 
V

Query Sequence

>WP_041368447.1 NCBI__GCF_000021745.1:WP_041368447.1
MDSVASAEPAARPQRWGAASLRLALLGLALPVGALLVWEIAVRLGWAQGRLMPAPSVIAS
NLAQLAASGDLWLHIRATLLRVGAGFALGVFAGTTLGVLAGASSLGRALIDPTLQGLRAI
PSIAWVPLFILWFGIFEASKIALIAVGVAFPIYLGIFGAILAVDRKIIEAGRSFRLEGVA
LARRILFPAVLPHYVVALRSGLGLGWMFVVAAEFMGASEGLGYLLVDGQQLGKPAQIIAA
IFTFAVLGKATDALLVAASAPFLRWQDTVGQTSGEGG

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory