Comparing WP_041456588.1 NCBI__GCF_000204075.1:WP_041456588.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
1ji0A Crystal structure analysis of the abc transporter from thermotoga maritima
57% identity, 94% coverage: 16:248/248 of query aligns to 6:238/240 of 1ji0A
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
30% identity, 94% coverage: 15:248/248 of query aligns to 3:253/254 of 1g6hA
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
30% identity, 94% coverage: 15:248/248 of query aligns to 3:253/253 of 1g9xB
6s8nB Cryo-em structure of lptb2fgc in complex with lipopolysaccharide (see paper)
33% identity, 90% coverage: 26:248/248 of query aligns to 12:235/238 of 6s8nB
6s8gA Cryo-em structure of lptb2fgc in complex with amp-pnp (see paper)
33% identity, 90% coverage: 26:248/248 of query aligns to 12:235/238 of 6s8gA
6mhzA Vanadate trapped cryo-em structure of e.Coli lptb2fg transporter (see paper)
33% identity, 90% coverage: 26:248/248 of query aligns to 12:235/235 of 6mhzA
6mbnA Lptb e163q in complex with atp (see paper)
33% identity, 90% coverage: 26:248/248 of query aligns to 13:236/241 of 6mbnA
6b89A E. Coli lptb in complex with adp and novobiocin (see paper)
33% identity, 90% coverage: 26:247/248 of query aligns to 12:234/234 of 6b89A
4p31A Crystal structure of a selenomethionine derivative of e. Coli lptb in complex with adp-magensium (see paper)
33% identity, 90% coverage: 26:247/248 of query aligns to 12:234/234 of 4p31A
6mjpA Lptb(e163q)fgc from vibrio cholerae (see paper)
31% identity, 94% coverage: 16:248/248 of query aligns to 2:235/240 of 6mjpA
6b8bA E. Coli lptb in complex with adp and a novobiocin derivative (see paper)
33% identity, 89% coverage: 26:246/248 of query aligns to 12:233/233 of 6b8bA
3c4jA Abc protein artp in complex with atp-gamma-s
31% identity, 94% coverage: 14:247/248 of query aligns to 1:238/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
31% identity, 94% coverage: 14:247/248 of query aligns to 1:238/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
31% identity, 94% coverage: 14:247/248 of query aligns to 1:238/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
31% identity, 94% coverage: 14:247/248 of query aligns to 1:238/242 of 2oljA
8tzjA Cryo-em structure of vibrio cholerae ftse/ftsx complex (see paper)
35% identity, 79% coverage: 16:211/248 of query aligns to 2:200/220 of 8tzjA
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
30% identity, 86% coverage: 25:237/248 of query aligns to 10:224/240 of 4ymuJ
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
28% identity, 90% coverage: 16:238/248 of query aligns to 2:225/241 of 4u00A
P04983 Ribose import ATP-binding protein RbsA; EC 7.5.2.7 from Escherichia coli (strain K12) (see paper)
31% identity, 78% coverage: 35:228/248 of query aligns to 271:474/501 of P04983
Sites not aligning to the query:
A5U7B7 Cell division ATP-binding protein FtsE from Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) (see 2 papers)
34% identity, 79% coverage: 31:227/248 of query aligns to 18:216/229 of A5U7B7
>WP_041456588.1 NCBI__GCF_000204075.1:WP_041456588.1
MNADESRYKNGHDFKILEIQELDVNYGGIQALKKINLTIQKGEVVTLIGANGAGKSTTLR
AISKIVTPKNGQIIYSGRNITRRLPHEVVKFGIAHCPEGRRVLAKQTVLDNLLLGAYIRF
NQTEIKADIKQQFELFPRLAQRQNQLAGTLSGGEQQMLAIARALMSRPQLLLLDEPSLGL
APAIVKEIFSIIENLRATGVTILLVEQNANLALQIADRGYVLEAGSITLSGAASNLINDE
RVKKAYLG
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory