Comparing WP_041457111.1 NCBI__GCF_000204075.1:WP_041457111.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 15 hits to proteins with known functional sites (download)
5vyeB Crystal structure of l-threonine aldolase from pseudomonas putida
67% identity, 98% coverage: 6:342/345 of query aligns to 4:340/344 of 5vyeB
O50584 Low specificity L-threonine aldolase; Low specificity L-TA; EC 4.1.2.48 from Pseudomonas sp. (strain NCIMB 10558) (see paper)
65% identity, 99% coverage: 1:341/345 of query aligns to 1:341/346 of O50584
1v72A Crystal structure of phenylserine aldolase from pseudomonas putida
44% identity, 97% coverage: 8:341/345 of query aligns to 7:342/345 of 1v72A
1lw5B X-ray structure of l-threonine aldolase (low-specificity) in complex with glycine (see paper)
27% identity, 66% coverage: 10:237/345 of query aligns to 6:225/343 of 1lw5B
Sites not aligning to the query:
1lw4B X-ray structure of l-threonine aldolase (low-specificity) in complex with l-allo-threonine (see paper)
27% identity, 66% coverage: 10:237/345 of query aligns to 6:225/343 of 1lw4B
Sites not aligning to the query:
1jg8D Crystal structure of threonine aldolase (low-specificity)
27% identity, 66% coverage: 10:237/345 of query aligns to 7:226/344 of 1jg8D
Sites not aligning to the query:
3wgbD Crystal structure of aeromonas jandaei l-allo-threonine aldolase (see paper)
25% identity, 83% coverage: 24:311/345 of query aligns to 20:298/324 of 3wgbD
Sites not aligning to the query:
O07051 L-allo-threonine aldolase; L-allo-TA; L-allo-threonine acetaldehyde-lyase; EC 4.1.2.49 from Aeromonas jandaei (see paper)
23% identity, 91% coverage: 24:337/345 of query aligns to 22:329/338 of O07051
4lnmA Structure of escherichia coli threonine aldolase in complex with serine (see paper)
25% identity, 80% coverage: 35:311/345 of query aligns to 30:301/331 of 4lnmA
Sites not aligning to the query:
4rjyA Crystal structure of e. Coli l-threonine aldolase in complex with a non-covalently uncleaved bound l-serine substrate (see paper)
25% identity, 80% coverage: 35:311/345 of query aligns to 30:301/332 of 4rjyA
4lnlA Structure of escherichia coli threonine aldolase in complex with allo- thr (see paper)
25% identity, 80% coverage: 35:311/345 of query aligns to 30:301/332 of 4lnlA
Sites not aligning to the query:
4lnjA Structure of escherichia coli threonine aldolase in unliganded form (see paper)
25% identity, 80% coverage: 35:311/345 of query aligns to 30:301/332 of 4lnjA
Sites not aligning to the query:
3wlxA Crystal structure of low-specificity l-threonine aldolase from escherichia coli
24% identity, 80% coverage: 35:311/345 of query aligns to 30:301/331 of 3wlxA
Sites not aligning to the query:
Q8RXU4 Low-specificity L-threonine aldolase 1; Threonine aldolase 1; EC 4.1.2.48 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
23% identity, 70% coverage: 59:298/345 of query aligns to 57:297/358 of Q8RXU4
3wgcB Aeromonas jandaei l-allo-threonine aldolase h128y/s292r double mutant (see paper)
22% identity, 91% coverage: 24:337/345 of query aligns to 21:326/333 of 3wgcB
Sites not aligning to the query:
>WP_041457111.1 NCBI__GCF_000204075.1:WP_041457111.1
MNSNLEQFASDNYAGICPEAMDYMIKANQGSAPAYGNDEWTQKAADYFRELFEIDCEVFF
TFNGTAANSLSLAALCQSYHSVICHETAHIETDECGAPEFASNGSKLLLAKGENGKLTPQ
EIESVITKRADIHYPKPKVISITQATELGTLYSIEELLAIKEVAHKYQLKIHMDGARFAN
SVAAMNKSPAEMSWKSGVDVLCFCGTKNGMALGEAIIFFNRALAEDFDYRCKQAGQLASK
MRFISAPWLGLLETGAWLKNARYANQCAAYLENELLKIEGVEIMFPREANAVFVKLPEQV
INDLKAKNWLFYTFIGVGGVRFMCSWNTTKGRIDELIGDIKTGLG
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory