SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_041763696.1 NCBI__GCF_000020045.1:WP_041763696.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 5 hits to proteins with known functional sites (download)

P9WIB9 Secreted chorismate mutase; CM; *MtCM; EC 5.4.99.5 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see 4 papers)
30% identity, 96% coverage: 1:191/198 of query aligns to 2:195/199 of P9WIB9

query
sites
P9WIB9
M
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T
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P
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P
N
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R
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A
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V
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I
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L
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L
C
x
S
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L
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A
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P
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x
G
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P
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x
P
P
x
L
A
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A
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R
A
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A
D
 
D
G
 
G
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T
D
 
-
T
 
S
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Q
L
 
L
T
 
A
N
 
E
L
 
L
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V
A
 
D
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A
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A
S
 
A
Q
 
E
R
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R
L
 
L
A
 
E
L
 
V
A
 
A
E
 
D
P
 
P
V
 
V
A
 
A
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A
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F
K
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K
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W
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R
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A
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Q
Q
 
L
P
 
P
I
 
I
T
 
E
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S
P
 
G
R
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R
E
 
V
Q
 
E
A
 
Q
L
 
Q
L
 
L
T
 
A
D
 
K
V
 
L
E
 
G
K
 
E
R
 
D
A
 
A
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R
R
 
S
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Q
G
 
H
V
 
I
D
 
D
P
 
P
A
 
D
F
 
Y
A
 
V
H
 
T
A
 
R
F
 
V
F
 
F
Q
 
D
D
 
D
Q
 
Q
I
 
I
D
 
R
A
 
A
S
x
T
K
 
E
D
 
A
V
 
I
Q
x
E
N
 
Y
A
 
S
L
 
R
F
 
F
D
 
S
T
 
D
W
 
W
R
 
K
-
 
L
-
 
N
-
 
P
T
 
A
T
 
S
R
 
A
P
 
P
P
 
P
E
 
E
G
 
-
A
 
-
A
 
P
P
 
P
D
 
D
L
 
L
A
 
S
T
 
A
S
 
S
L
 
-
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R
P
 
S
Q
 
A
L
 
I
D
 
D
K
 
S
L
 
L
T
 
N
Q
 
N
S
 
R
L
 
M
I
 
L
P
 
S
A
 
Q
L
 
I
A
 
W
R
 
S
V
 
H
Q
 
W
R
 
S
L
 
L
R
 
L
A
 
S
Q
 
A
D
 
P
D
 
S
C
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C
P
 
A
M
 
A
R
 
Q
V
 
L
A
 
D
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R
S
 
A
I
 
K
D
 
R
N
 
D
W
 
I
K
 
V
S
 
R
L
 
S
T
 
R
R
 
H
Y
 
L
D
 
D
N
 
S
T
 
L
H
 
Y
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Q
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R
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A
L
 
L
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T
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T
A
 
A
L
 
T
G
 
Q
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S
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Y
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C
E
 
Q
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A

Sites not aligning to the query:

2ao2B The 2.07 angstrom crystal structure of mycobacterium tuberculosis chorismate mutase reveals unexpected gene duplication and suggests a role in host-pathogen interactions (see paper)
28% identity, 80% coverage: 33:191/198 of query aligns to 3:161/165 of 2ao2B

query
sites
2ao2B
T
 
S
S
 
Q
L
 
L
T
 
A
N
 
E
L
 
L
V
 
V
A
 
D
L
 
A
V
 
A
S
 
A
Q
 
E
R
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R
L
 
L
A
 
E
L
 
V
A
 
A
E
 
D
P
 
P
V
 
V
A
 
A
R
 
A
Y
 
F
K
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K
W
 
W
A
 
R
H
 
A
H
 
Q
Q
x
L
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P
I
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I
T
x
E
D
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D
T
 
S
P
 
G
R
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R
E
 
V
Q
 
E
A
 
Q
L
x
Q
L
 
L
T
 
A
D
 
K
V
 
L
E
 
G
K
 
E
R
 
D
A
 
A
S
 
R
R
 
S
A
 
Q
G
 
H
V
 
I
D
 
D
P
 
P
A
 
D
F
 
Y
A
 
V
H
 
T
A
 
R
F
 
V
F
 
F
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D
D
 
D
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Q
I
 
I
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R
A
 
A
S
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K
x
E
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A
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I
Q
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E
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Y
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S
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R
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F
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S
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D
W
 
W
R
 
K
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L
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N
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A
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R
 
A
P
 
P
P
 
P
E
 
E
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P
A
 
-
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-
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P
D
 
D
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S
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S
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A
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I
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D
K
 
S
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N
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M
I
 
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A

2ao2A The 2.07 angstrom crystal structure of mycobacterium tuberculosis chorismate mutase reveals unexpected gene duplication and suggests a role in host-pathogen interactions (see paper)
28% identity, 80% coverage: 33:191/198 of query aligns to 3:161/165 of 2ao2A

query
sites
2ao2A
T
 
S
S
 
Q
L
 
L
T
 
A
N
 
E
L
 
L
V
 
V
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D
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A
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E
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L
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E
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A
E
 
D
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P
V
 
V
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A
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A
Y
 
F
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K
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W
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R
H
 
A
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Q
Q
 
L
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P
I
 
I
T
 
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S
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G
R
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R
E
 
V
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E
A
 
Q
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Q
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L
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A
D
 
K
V
 
L
E
 
G
K
 
E
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D
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A
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R
R
 
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Q
G
 
H
V
 
I
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D
P
 
P
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D
F
 
Y
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V
H
 
T
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R
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V
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F
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D
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D
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Q
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I
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A
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K
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A
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I
Q
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E
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Y
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S
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R
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F
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S
T
 
D
W
 
W
R
 
K
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L
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N
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A
T
 
S
R
 
A
P
 
P
P
 
P
E
 
E
G
 
P
A
 
-
A
 
-
P
 
P
D
 
D
L
 
L
A
 
S
T
 
A
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S
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R
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S
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A
L
 
I
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D
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S
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L
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N
Q
 
N
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R
L
 
M
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L
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S
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Q
L
 
I
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W
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S
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H
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S
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L
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L
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S
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A
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P
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S
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A
M
 
A
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Q
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L
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D
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R
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A
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K
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D
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R
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S
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R
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H
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D
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S
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Y
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Q
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R
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A
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L
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T
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T
A
 
A
L
 
T
G
 
Q
H
 
S
V
 
Y
C
 
C
E
 
Q
S
 
A

2fp2B Secreted chorismate mutase from mycobacterium tuberculosis (see paper)
28% identity, 80% coverage: 33:191/198 of query aligns to 1:159/163 of 2fp2B

query
sites
2fp2B
T
 
S
S
 
Q
L
 
L
T
 
A
N
 
E
L
 
L
V
 
V
A
 
D
L
 
A
V
 
A
S
 
A
Q
 
E
R
|
R
L
 
L
A
 
E
L
 
V
A
 
A
E
 
D
P
 
P
V
 
V
A
 
A
R
 
A
Y
 
F
K
|
K
W
 
W
A
 
R
H
 
A
H
 
Q
Q
 
L
P
 
P
I
|
I
T
x
E
D
|
D
T
 
S
P
 
G
R
|
R
E
 
V
Q
 
E
A
 
Q
L
x
Q
L
 
L
T
 
A
D
 
K
V
 
L
E
 
G
K
 
E
R
 
D
A
 
A
S
 
R
R
 
S
A
 
Q
G
 
H
V
 
I
D
 
D
P
 
P
A
 
D
F
 
Y
A
 
V
H
 
T
A
 
R
F
 
V
F
 
F
Q
 
D
D
 
D
Q
 
Q
I
|
I
D
 
R
A
 
A
S
x
T
K
x
E
D
 
A
V
 
I
Q
x
E
N
 
Y
A
 
S
L
 
R
F
 
F
D
 
S
T
 
D
W
 
W
R
 
K
-
 
L
-
 
N
-
 
P
T
 
A
T
 
S
R
 
A
P
 
P
P
 
P
E
 
E
G
 
P
A
 
-
A
 
-
P
 
P
D
 
D
L
 
L
A
 
S
T
 
A
S
 
S
L
 
-
R
|
R
P
 
S
Q
 
A
L
 
I
D
 
D
K
 
S
L
 
L
T
 
N
Q
 
N
S
 
R
L
 
M
I
 
L
P
 
S
A
 
Q
L
 
I
A
 
W
R
 
S
V
 
H
Q
 
W
R
 
S
L
 
L
R
 
L
A
 
S
Q
 
A
D
 
P
D
 
S
C
 
C
P
 
A
M
 
A
R
 
Q
V
 
L
A
 
D
R
 
R
S
 
A
I
 
K
D
 
R
N
 
D
W
 
I
K
 
V
S
 
R
L
 
S
T
 
R
R
 
H
Y
 
L
D
 
D
N
 
S
T
 
L
H
 
Y
N
 
Q
A
 
R
A
 
A
L
 
L
T
 
T
R
 
T
A
 
A
L
 
T
G
 
Q
H
 
S
V
 
Y
C
 
C
E
 
Q
S
 
A

Q7CHH5 Secreted chorismate mutase; CM; *YpCM; EC 5.4.99.5 from Yersinia pestis (see paper)
25% identity, 54% coverage: 41:146/198 of query aligns to 39:143/186 of Q7CHH5

query
sites
Q7CHH5
L
 
L
V
 
I
S
 
N
Q
 
E
R
 
R
L
 
L
A
 
S
L
 
Y
A
 
M
E
 
K
P
 
D
V
 
V
A
 
A
R
 
G
Y
 
Y
K
 
K
W
 
A
A
 
E
H
 
N
H
 
H
Q
 
L
P
 
P
I
 
I
T
 
E
D
 
D
T
 
R
P
 
I
R
 
Q
E
 
E
Q
 
E
A
 
K
L
 
V
L
 
I
T
 
N
D
 
S
V
 
A
E
 
M
K
 
A
R
 
Q
A
 
A
S
 
E
R
 
S
A
 
L
G
 
G
V
 
L
D
 
N
P
 
G
A
 
E
F
 
S
A
 
I
H
 
K
A
 
P
F
 
L
F
 
M
Q
 
V
D
 
A
Q
 
Q
I
 
I
D
 
N
A
 
A
S
 
A
K
 
K
D
 
A
V
 
I
Q
 
Q
N
 
Y
A
 
R
L
 
Y
F
 
R
D
 
A
T
 
D
W
 
W
R
 
-
T
 
L
T
 
S
R
 
Q
P
 
P
P
 
E
E
 
P
G
 
G
A
 
W
A
 
Q
P
 
P
D
 
K
L
 
P
A
 
L
T
 
D
S
 
D
L
 
V
R
 
R
P
 
A
Q
 
N
L
 
I
D
 
G
K
 
E
L
 
L
T
 
S
Q
 
T
S
 
K
L
 
I
I
 
L
P
 
E
A
 
Q
L
 
I
A
 
A
R
 
E

Sites not aligning to the query:

Query Sequence

>WP_041763696.1 NCBI__GCF_000020045.1:WP_041763696.1
MTRPNLIGALGAILLCSTLAFAPAPARADGDDTSLTNLVALVSQRLALAEPVARYKWAHH
QPITDTPREQALLTDVEKRASRAGVDPAFAHAFFQDQIDASKDVQNALFDTWRTTRPPEG
AAPDLATSLRPQLDKLTQSLIPALARVQRLRAQDDCPMRVARSIDNWKSLTRYDNTHNAA
LTRALGHVCESGGVGATG

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory