Comparing WP_041936129.1 NCBI__GCF_000009265.1:WP_041936129.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P04983 Ribose import ATP-binding protein RbsA; EC 7.5.2.7 from Escherichia coli (strain K12) (see paper)
36% identity, 98% coverage: 7:501/503 of query aligns to 5:492/501 of P04983
8k1pB Mycobacterial efflux pump, adp+vanadate bound state
34% identity, 43% coverage: 7:223/503 of query aligns to 4:210/213 of 8k1pB
8k1oB Mycobacterial efflux pump, amppnp bound state
34% identity, 43% coverage: 7:223/503 of query aligns to 6:212/215 of 8k1oB
5lj7A Structure of aggregatibacter actinomycetemcomitans macb bound to atp (p21) (see paper)
31% identity, 43% coverage: 7:222/503 of query aligns to 4:222/592 of 5lj7A
5lilA Structure of aggregatibacter actinomycetemcomitans macb bound to atpys (p21) (see paper)
31% identity, 43% coverage: 7:222/503 of query aligns to 4:222/615 of 5lilA
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
33% identity, 43% coverage: 5:221/503 of query aligns to 1:215/241 of 4u00A
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
33% identity, 44% coverage: 7:228/503 of query aligns to 2:227/343 of P30750
Sites not aligning to the query:
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
33% identity, 44% coverage: 7:228/503 of query aligns to 3:228/344 of 6cvlD
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
33% identity, 44% coverage: 7:228/503 of query aligns to 3:228/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
33% identity, 44% coverage: 7:228/503 of query aligns to 3:228/344 of 3tuiC
P75831 Macrolide export ATP-binding/permease protein MacB; EC 7.6.2.- from Escherichia coli (strain K12) (see paper)
33% identity, 43% coverage: 5:221/503 of query aligns to 3:222/648 of P75831
7roqA Alternative structure of human abca1
31% identity, 39% coverage: 27:220/503 of query aligns to 792:979/1831 of 7roqA
Sites not aligning to the query:
3c4jA Abc protein artp in complex with atp-gamma-s
30% identity, 43% coverage: 7:221/503 of query aligns to 4:217/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
30% identity, 43% coverage: 7:221/503 of query aligns to 4:217/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
30% identity, 43% coverage: 7:221/503 of query aligns to 4:217/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
30% identity, 43% coverage: 7:221/503 of query aligns to 4:217/242 of 2oljA
8ee6A Cryo-em structure of human abca7 in pe/ch nanodiscs (see paper)
31% identity, 43% coverage: 5:220/503 of query aligns to 622:833/1808 of 8ee6A
Sites not aligning to the query:
7tbyA The structure of human abca1 in nanodisc (see paper)
31% identity, 39% coverage: 27:220/503 of query aligns to 703:891/1788 of 7tbyA
Sites not aligning to the query:
8eopA Cryo-em structure of nanodisc reconstituted human abca7 eq mutant in atp bound closed state (see paper)
31% identity, 43% coverage: 5:220/503 of query aligns to 648:859/1687 of 8eopA
Sites not aligning to the query:
F1MWM0 Retinal-specific phospholipid-transporting ATPase ABCA4; ATP-binding cassette sub-family A member 4; RIM ABC transporter; RIM protein; RmP; Retinal-specific ATP-binding cassette transporter; EC 7.6.2.1 from Bos taurus (Bovine) (see 2 papers)
29% identity, 42% coverage: 9:220/503 of query aligns to 934:1138/2281 of F1MWM0
Sites not aligning to the query:
>WP_041936129.1 NCBI__GCF_000009265.1:WP_041936129.1
MTDKPAIELVGIDKKFGAVHANKDINLTVAKGTIHGIIGENGAGKSTLMSIIYGFYHADS
GEIRVNGNPVTIRDSQAAIATGIGMVHQHFMLVDNFTVLENIMLGAEGGMLLARGVASAR
AELKRLETEYGLEVDPDALIEELPVGLQQRVEILKAMYRGAEILILDEPTGVLTPAEADH
LFRILKVLRDQGKTIILITHKLREIMAITDTVSVMRRGEMVATRKTAETTVEELAELMVG
RRVLLRVQKGEANPGSAVLSVRNLTVKDNRGVTMVDNVSFDVRAGEIVGIAGVAGNGQSE
LLEAIAGIRKPTSGEILLDGQTIDKADPARLRDLGLAHIPEDRHHMGLVLKFEEYENSVL
GYHRRPAYSKGPLLDLEAIRKDAMEKIEKYDIRPPNPRLKTANFSGGNQQKIVVAREIER
DLKMLIIGQPTRGVDIGAIEFIHRRIIEMRDAGKAILLVSVELDEIRSLSDRILVMFAGH
VVGEKTPDAGEQTLGLMMAGIAA
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory