Comparing WP_041937003.1 NCBI__GCF_000009265.1:WP_041937003.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
3klcB Crystal structure of hyperthermophilic nitrilase (see paper)
34% identity, 45% coverage: 9:266/579 of query aligns to 3:260/261 of 3klcB
3klcA Crystal structure of hyperthermophilic nitrilase (see paper)
34% identity, 45% coverage: 9:266/579 of query aligns to 3:260/261 of 3klcA
Q9UYV8 Nitrilase; PaNit; EC 3.5.5.1 from Pyrococcus abyssi (strain GE5 / Orsay) (see paper)
34% identity, 45% coverage: 9:266/579 of query aligns to 4:261/262 of Q9UYV8
6ypaB The c146a variant of an amidase from pyrococcus horikoshii with bound glutaramide
35% identity, 44% coverage: 12:266/579 of query aligns to 14:268/269 of 6ypaB
7ovgA The c146a variant of an amidase from pyrococcus horikoshii with bound acetamide (see paper)
35% identity, 44% coverage: 12:266/579 of query aligns to 8:262/263 of 7ovgA
Q9NQR4 Omega-amidase NIT2; Nitrilase homolog 2; EC 3.5.1.3 from Homo sapiens (Human) (see 2 papers)
28% identity, 46% coverage: 6:271/579 of query aligns to 3:275/276 of Q9NQR4
Q44185 N-carbamoyl-D-amino acid hydrolase; D-N-alpha-carbamilase; EC 3.5.1.77 from Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium radiobacter) (see paper)
27% identity, 42% coverage: 21:265/579 of query aligns to 21:298/304 of Q44185
8hpcC Crystal structure of c171a mutant of n-carbamyl-d-amino acid amidohydrolase complexed with n-carbamyl-d-hydroxyphenylglycine
26% identity, 42% coverage: 21:265/579 of query aligns to 20:297/303 of 8hpcC
1uf8A Crystal structure of c171a/v236a mutant of n-carbamyl-d-amino acid amidohydrolase complexed with n-carbamyl-d-phenylalanine
27% identity, 42% coverage: 25:265/579 of query aligns to 24:297/303 of 1uf8A
1uf7A Crystal structure of c171a/v236a mutant of n-carbamyl-d-amino acid amidohydrolase complexed with n-carbamyl-d-valine
27% identity, 42% coverage: 25:265/579 of query aligns to 24:297/303 of 1uf7A
1uf5A Crystal structure of c171a/v236a mutant of n-carbamyl-d-amino acid amidohydrolase complexed with n-carbamyl-d-methionine
27% identity, 42% coverage: 25:265/579 of query aligns to 24:297/303 of 1uf5A
O25067 Aliphatic amidase; Acylamide amidohydrolase; EC 3.5.1.4 from Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori) (see paper)
25% identity, 42% coverage: 6:247/579 of query aligns to 19:263/339 of O25067
Q9RQ17 Aliphatic amidase; Acylamide amidohydrolase; Wide spectrum amidase; EC 3.5.1.4 from Geobacillus stearothermophilus (Bacillus stearothermophilus) (see paper)
26% identity, 42% coverage: 6:247/579 of query aligns to 19:264/348 of Q9RQ17
Q9UBR1 Beta-ureidopropionase; BUP-1; Beta-alanine synthase; N-carbamoyl-beta-alanine amidohydrolase; EC 3.5.1.6 from Homo sapiens (Human) (see 4 papers)
28% identity, 37% coverage: 27:243/579 of query aligns to 99:344/384 of Q9UBR1
Sites not aligning to the query:
P46011 Bifunctional nitrilase/nitrile hydratase NIT4; Cyanoalanine nitrilase; Nitrilase 4; EC 3.5.5.1; EC 3.5.5.4; EC 4.2.1.65 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
23% identity, 45% coverage: 3:265/579 of query aligns to 32:330/355 of P46011
5k62A Crystal structure of n-terminal amidase c187s (see paper)
29% identity, 21% coverage: 6:129/579 of query aligns to 6:134/430 of 5k62A
Sites not aligning to the query:
5k61A Crystal structure of n-terminal amidase with gln-gly peptide (see paper)
29% identity, 21% coverage: 6:129/579 of query aligns to 6:134/431 of 5k61A
Sites not aligning to the query:
5b62A Crystal structure of n-terminal amidase with asn-glu-ala peptide (see paper)
28% identity, 21% coverage: 6:129/579 of query aligns to 6:134/426 of 5b62A
Sites not aligning to the query:
5k66A Crystal structure of n-terminal amidase with asn-glu peptide (see paper)
29% identity, 21% coverage: 6:129/579 of query aligns to 6:134/430 of 5k66A
Sites not aligning to the query:
5h8lB Crystal structure of medicago truncatula n-carbamoylputrescine amidohydrolase (mtcpa) c158s mutant in complex with putrescine (see paper)
25% identity, 45% coverage: 291:549/579 of query aligns to 2:265/298 of 5h8lB
>WP_041937003.1 NCBI__GCF_000009265.1:WP_041937003.1
MTSTQSYTAATIQFEPTMFEKARNISRLTALCEEAAEAGARLIVTPEMGTTGYCWFDRAE
VKPFVETIPGATTDVFQAIASKHRCYIVVGMPEVDPASDLYYNTAVLIGPGGVVGRHRKS
HPYIAEPKWAANGDIVHEVFETEIGRISMLVCMDLHFFETARLEALAGADIICHISNWLQ
ERTPAPYWINRAFENACYVIESNRWGLERTVQFSGGSCLIEPDGTVAASIDTGDGIAYGT
VDLARARRREVLFEPVFKSRRPELYMNMMTNSFTWNPGDYFRLYGYQPIPRGRASRAAVA
QFAPTSVVADNLARIADLAAEAKATTAPDILVFPELSLTGLEAPHGRAESLSGPTVSAFV
RLAMKLGFYLVAGFAEEDGDKVYNSAVLAGPEGLVGSYRKTHLGIADSWATAGDEWKVYD
LAIGRVGLAVGHDALYPEAIRSLALMGCDVVACPSAIAGTFTGSHTGTKIPHNYPIPKGA
DPYHWHALRVRGGENNLYFAFANVLDAARGYQGKSAVFGPDSFAFPRQESAILDEDGIAA
AAVDTTNLDTPYPTNIVRRKDLVVMRQPHHYQPLVKWHQ
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory