Comparing WP_042444992.1 NCBI__GCF_000010725.1:WP_042444992.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P04983 Ribose import ATP-binding protein RbsA; EC 7.5.2.7 from Escherichia coli (strain K12) (see paper)
43% identity, 93% coverage: 3:500/533 of query aligns to 2:489/501 of P04983
3c4jA Abc protein artp in complex with atp-gamma-s
31% identity, 40% coverage: 11:222/533 of query aligns to 9:216/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
31% identity, 40% coverage: 11:222/533 of query aligns to 9:216/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
31% identity, 40% coverage: 11:222/533 of query aligns to 9:216/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
31% identity, 40% coverage: 11:222/533 of query aligns to 9:216/242 of 2oljA
3d31A Modbc from methanosarcina acetivorans (see paper)
30% identity, 38% coverage: 20:222/533 of query aligns to 15:207/348 of 3d31A
Sites not aligning to the query:
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
30% identity, 41% coverage: 5:222/533 of query aligns to 4:229/253 of 1g9xB
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
32% identity, 40% coverage: 5:219/533 of query aligns to 2:211/241 of 4u00A
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
30% identity, 41% coverage: 5:222/533 of query aligns to 4:229/254 of 1g6hA
6z4wA Ftse structure from streptococcus pneumoniae in complex with adp (space group p 1) (see paper)
30% identity, 43% coverage: 4:234/533 of query aligns to 2:230/230 of 6z4wA
A0A0H2ZM82 Cell division ATP-binding protein FtsE from Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) (see paper)
30% identity, 43% coverage: 4:234/533 of query aligns to 2:230/230 of A0A0H2ZM82
6z67B Ftse structure of streptococcus pneumoniae in complex with amppnp at 2.4 a resolution (see paper)
30% identity, 42% coverage: 4:229/533 of query aligns to 2:225/229 of 6z67B
P75957 Lipoprotein-releasing system ATP-binding protein LolD; EC 7.6.2.- from Escherichia coli (strain K12) (see paper)
33% identity, 41% coverage: 1:220/533 of query aligns to 1:222/233 of P75957
7arlD Lolcde in complex with lipoprotein and adp (see paper)
34% identity, 38% coverage: 21:220/533 of query aligns to 22:219/222 of 7arlD
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
30% identity, 40% coverage: 10:223/533 of query aligns to 6:216/240 of 4ymuJ
7mdyC Lolcde nucleotide-bound
34% identity, 38% coverage: 21:220/533 of query aligns to 22:219/226 of 7mdyC
Sites not aligning to the query:
P75831 Macrolide export ATP-binding/permease protein MacB; EC 7.6.2.- from Escherichia coli (strain K12) (see paper)
33% identity, 41% coverage: 5:222/533 of query aligns to 4:222/648 of P75831
1ji0A Crystal structure analysis of the abc transporter from thermotoga maritima
29% identity, 44% coverage: 5:237/533 of query aligns to 6:233/240 of 1ji0A
7v8iD Lolcd(e171q)e with bound amppnp in nanodiscs (see paper)
33% identity, 38% coverage: 21:220/533 of query aligns to 24:221/229 of 7v8iD
Sites not aligning to the query:
5x40A Structure of a cbio dimer bound with amppcp (see paper)
33% identity, 44% coverage: 5:238/533 of query aligns to 4:234/280 of 5x40A
>WP_042444992.1 NCBI__GCF_000010725.1:WP_042444992.1
MGQTILKAADIRKVFPGVVALDGVRLEVAQGEVHALLGENGAGKSTFLKILAGAQPSDGG
NMLFNGQPLDPADTPIVRQRLGIVTIYQEFNLLPAMTIAENMYLGREPLRRNGLIDWRRM
YRDAQTVIDELGLDLDPRMPVRVLSVAEQQMVEISKALTMNARLIIMDEPTAALSGKEVD
KLHEIIHGLRAKGISIIYVTHRLIEVTAVCDRFTVFRDGRYVDTRAVAESTVQDMVRLMV
GRDVEFQRRRDRFAGERVMLEVRGVSRAGSATDPHACVLSDLSVQVRAGEIVGFAGLVGA
GRTELARVIFGADGCDSGVILVDGRTASIRTPSDAIAAGIALVPEDRKQQGCFLPHSIRH
NMSLPSLKRLSKWKFFVDEAGERALIADYTRKLGIRMANDGVAIGTLSGGNQQKVLLARC
MALNPKVLIVDEPTRGIDIGAKAEVHQVLFEMAKAGVAVIVISSELPEVMAVSDRIITFR
EGRITGSLPAEDATEEELMSLMALGGSATVGHAAGHAAAPNGSGAGAHSHAVH
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory