SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_043529622.1 NCBI__GCF_000759345.1:WP_043529622.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

1yleA The structure of arginine/ornithine succinyltransferase subunit ai from pseudomonas aeruginosa.
36% identity, 95% coverage: 1:335/354 of query aligns to 3:323/330 of 1yleA

query
sites
1yleA
M
 
M
L
 
L
V
 
V
V
 
M
R
 
R
P
 
P
A
 
A
R
 
Q
P
 
A
A
 
A
D
 
D
L
 
L
P
 
P
A
 
Q
L
 
V
E
 
Q
R
 
R
L
 
L
A
 
A
S
 
A
S
 
D
A
 
S
T
 
P
P
 
V
R
 
G
L
 
V
T
 
T
N
 
S
L
 
L
P
 
P
A
 
D
H
 
D
R
 
A
D
 
E
R
 
R
L
 
L
E
 
R
E
 
D
R
 
K
I
 
I
A
 
L
R
 
A
S
 
S
Q
 
E
R
 
A
A
 
S
F
 
F
S
 
A
H
 
A
D
 
E
I
 
V
D
 
S
F
 
Y
P
 
N
G
 
G
E
 
E
E
 
E
N
 
S
Y
 
Y
T
 
F
F
 
F
V
 
V
I
 
L
E
 
E
D
 
D
R
 
S
E
 
A
R
 
S
D
 
G
E
 
E
V
 
L
V
 
V
G
 
G
T
 
C
A
 
S
T
 
A
I
 
I
R
 
V
A
 
A
L
 
S
A
 
A
G
 
G
A
 
F
H
 
S
E
 
E
A
 
P
Y
 
F
Y
 
Y
T
 
S
Y
 
F
R
 
R
Q
 
N
E
 
E
T
 
T
L
 
F
I
 
V
H
 
H
A
 
A
S
 
S
Q
 
R
Q
 
S
L
 
L
N
 
S
V
 
I
R
 
H
R
 
N
E
 
K
V
 
I
Q
 
H
T
 
V
L
 
L
A
 
S
L
 
L
S
 
C
H
 
H
E
 
D
V
 
L
S
 
T
D
 
G
A
 
N
S
 
S
L
 
L
L
 
L
C
 
T
A
 
S
L
 
F
S
 
Y
L
 
V
H
 
Q
P
 
R
R
 
D
Y
 
L
K
 
V
D
 
Q
T
 
S
S
 
V
A
 
Y
E
 
A
S
 
E
L
 
L
L
 
N
R
 
S
R
 
R
S
 
G
R
 
R
L
 
L
M
 
L
F
 
F
I
 
M
A
 
A
Q
 
S
Y
 
H
P
 
P
E
 
E
R
 
R
F
 
F
S
 
A
Q
 
D
I
 
A
L
 
V
A
 
V
V
 
V
A
x
E
F
 
I
P
 
V
G
 
G
Y
 
Y
L
 
S
D
 
D
N
 
E
D
 
Q
G
 
G
E
 
E
S
 
S
P
 
P
F
 
F
W
 
W
N
 
N
S
 
A
V
 
V
G
 
G
R
 
R
H
 
N
F
 
F
F
 
F
V
 
D
R
 
L
G
 
N
Y
 
Y
Q
 
I
E
 
E
M
 
A
N
 
E
H
 
K
V
 
L
A
 
S
G
 
G
V
 
L
R
 
K
S
 
-
K
 
-
S
 
-
F
 
-
I
 
-
A
 
-
E
 
-
V
 
-
M
 
-
P
 
-
Q
 
H
F
 
Y
P
 
P
L
 
I
Y
 
Y
L
 
V
P
 
P
L
 
L
L
 
L
T
 
P
P
 
D
Q
 
A
A
 
A
R
 
Q
A
 
E
A
 
S
I
 
M
G
 
G
R
 
Q
E
 
V
H
 
H
P
 
P
A
 
R
H
 
A
E
 
Q
R
 
I
A
 
T
L
 
F
E
 
D
E
 
I
M
 
L
L
 
M
A
 
R
E
 
E
G
 
G
F
 
F
L
 
E
R
 
T
S
 
D
R
 
N
H
 
Y
V
 
I
D
|
D
I
 
I
F
 
F
D
 
D
A
 
G
G
 
G
P
 
P
V
 
T
V
 
L
K
 
H
G
 
A
E
 
R
R
 
T
D
 
S
R
 
G
L
 
I
A
 
R
T
 
S
F
 
I
R
 
A
N
 
Q
A
 
S
A
 
R
W
 
V
H
 
V
P
 
P
V
 
V
R
 
K
I
 
I
R
 
G
P
 
E
Q
 
K
H
 
-
T
 
-
L
 
-
P
 
-
D
 
S
A
 
G
E
 
R
P
 
P
A
 
Y
M
 
L
I
 
V
A
 
T
N
 
N
Q
 
G
K
 
Q
L
 
L
G
 
Q
D
 
D
F
 
F
R
 
R
C
 
A
V
 
V
V
 
V
A
 
L
R
 
D
Y
 
L
A
 
D
L
 
W
S
 
A
P
 
P
T
 
G
G
 
K
Q
 
P
L
 
V
M
 
A
L
 
L
S
 
S
P
 
V
E
 
E
H
 
A
A
 
A
E
 
E
V
 
A
L
 
L
G
 
G
V
 
V
E
 
G
E
 
E
G
 
G
R
 
A
A
 
S
V
 
V

Query Sequence

>WP_043529622.1 NCBI__GCF_000759345.1:WP_043529622.1
MLVVRPARPADLPALERLASSATPRLTNLPAHRDRLEERIARSQRAFSHDIDFPGEENYT
FVIEDRERDEVVGTATIRALAGAHEAYYTYRQETLIHASQQLNVRREVQTLALSHEVSDA
SLLCALSLHPRYKDTSAESLLRRSRLMFIAQYPERFSQILAVAFPGYLDNDGESPFWNSV
GRHFFVRGYQEMNHVAGVRSKSFIAEVMPQFPLYLPLLTPQARAAIGREHPAHERALEEM
LAEGFLRSRHVDIFDAGPVVKGERDRLATFRNAAWHPVRIRPQHTLPDAEPAMIANQKLG
DFRCVVARYALSPTGQLMLSPEHAEVLGVEEGRAVLAAPLALPDAIDALDEGEL

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory